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Ruben Garrido-Oter
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Structure and function of the bacterial root microbiota in wild and domesticated barley
D Bulgarelli, R Garrido-Oter, PC Münch, A Weiman, J Dröge, Y Pan, ...
Cell host & microbe 17 (3), 392-403, 2015
12082015
Functional overlap of the Arabidopsis leaf and root microbiota
Y Bai, DB Müller, G Srinivas, R Garrido-Oter, E Potthoff, M Rott, ...
Nature 528 (7582), 364-369, 2015
10922015
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
7272017
NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice
J Zhang, YX Liu, N Zhang, B Hu, T Jin, H Xu, Y Qin, P Yan, X Zhang, ...
Nature biotechnology 37 (6), 676-684, 2019
7042019
Microbial interkingdom interactions in roots promote Arabidopsis survival
P Durán, T Thiergart, R Garrido-Oter, M Agler, E Kemen, P Schulze-Lefert, ...
Cell 175 (4), 973-983. e14, 2018
6982018
Microbiota and host nutrition across plant and animal kingdoms
S Hacquard, R Garrido-Oter, A González, S Spaepen, G Ackermann, ...
Cell host & microbe 17 (5), 603-616, 2015
6742015
Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives
K Schlaeppi, N Dombrowski, RG Oter, E Ver Loren van Themaat, ...
Proceedings of the National Academy of Sciences 111 (2), 585-592, 2014
5192014
Interplay between innate immunity and the plant microbiota
S Hacquard, S Spaepen, R Garrido-Oter, P Schulze-Lefert
Annual review of Phytopathology 55, 565-589, 2017
4282017
Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities
R Zgadzaj, R Garrido-Oter, DB Jensen, A Koprivova, P Schulze-Lefert, ...
Proceedings of the National Academy of Sciences 113 (49), E7996-E8005, 2016
2942016
Modular traits of the Rhizobiales root microbiota and their evolutionary relationship with symbiotic rhizobia
R Garrido-Oter, RT Nakano, N Dombrowski, KW Ma, AC McHardy, ...
Cell host & microbe 24 (1), 155-167. e5, 2018
2652018
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
S Hacquard, B Kracher, K Hiruma, PC Münch, R Garrido-Oter, MR Thon, ...
Nature communications 7 (1), 11362, 2016
2542016
Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk
ML Berens, KW Wolinska, S Spaepen, J Ziegler, T Nobori, A Nair, V Krüler, ...
Proceedings of the National Academy of Sciences 116 (6), 2364-2373, 2019
2422019
Root-secreted coumarins and the microbiota interact to improve iron nutrition in Arabidopsis
CJ Harbort, M Hashimoto, H Inoue, Y Niu, R Guan, AD Rombolŕ, ...
Cell host & microbe 28 (6), 825-837. e6, 2020
2172020
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1822022
Root microbiota assembly and adaptive differentiation among European Arabidopsis populations
T Thiergart, P Durán, T Ellis, N Vannier, R Garrido-Oter, E Kemen, F Roux, ...
Nature ecology & evolution 4 (1), 122-131, 2020
1822020
Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time
N Dombrowski, K Schlaeppi, MT Agler, S Hacquard, E Kemen, ...
The ISME journal 11 (1), 43-55, 2017
1482017
High-throughput cultivation and identification of bacteria from the plant root microbiota
J Zhang, YX Liu, X Guo, Y Qin, R Garrido-Oter, P Schulze-Lefert, Y Bai
Nature Protocols 16 (2), 988-1012, 2021
1142021
Coordination of microbe–host homeostasis by crosstalk with plant innate immunity
KW Ma, Y Niu, Y Jia, J Ordon, C Copeland, A Emonet, N Geldner, R Guan, ...
Nature Plants 7 (6), 814-825, 2021
982021
Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota
K Wippel, K Tao, Y Niu, R Zgadzaj, N Kiel, R Guan, E Dahms, P Zhang, ...
Nature microbiology 6 (9), 1150-1162, 2021
912021
AMBER: assessment of metagenome BinnERs
F Meyer, P Hofmann, P Belmann, R Garrido-Oter, A Fritz, A Sczyrba, ...
Gigascience 7 (6), giy069, 2018
842018
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