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Brian D. Weitzner
Brian D. Weitzner
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Title
Cited by
Cited by
Year
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5622020
De novo design of potent and selective mimics of IL-2 and IL-15
DA Silva, S Yu, UY Ulge, JB Spangler, KM Jude, C Labão-Almeida, LR Ali, ...
Nature 565 (7738), 186-191, 2019
4142019
Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)
S Lyskov, FC Chou, SO Conchuir, BS Der, K Drew, D Kuroda, J Xu, ...
PloS one 8 (5), e63906, 2013
3942013
Benchmarking and analysis of protein docking performance in Rosetta v3. 2
S Chaudhury, M Berrondo, BD Weitzner, P Muthu, H Bergman, JJ Gray
PloS one 6 (8), e22477, 2011
3282011
Modeling and docking of antibody structures with Rosetta
BD Weitzner, JR Jeliazkov, S Lyskov, N Marze, D Kuroda, R Frick, ...
Nature protocols 12 (2), 401-416, 2017
2632017
An integrated framework advancing membrane protein modeling and design
RF Alford, J Koehler Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ...
PLoS computational biology 11 (9), e1004398, 2015
1692015
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
J Adolf-Bryfogle, O Kalyuzhniy, M Kubitz, BD Weitzner, X Hu, Y Adachi, ...
PLoS computational biology 14 (4), e1006112, 2018
1562018
Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization
BD Weitzner, D Kuroda, N Marze, J Xu, JJ Gray
Proteins: Structure, Function, and Bioinformatics 82 (8), 1611-1623, 2014
1042014
The origin of CDR H3 structural diversity
BD Weitzner, RL Dunbrack, JJ Gray
Structure 23 (2), 302-311, 2015
1022015
OpenFold: Retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization
G Ahdritz, N Bouatta, S Kadyan, Q Xia, W Gerecke, TJ O’Donnell, ...
Biorxiv, 2022.11. 20.517210, 2022
972022
Real-time PyMOL visualization for Rosetta and PyRosetta
EH Baugh, S Lyskov, BD Weitzner, JJ Gray
PloS one 6 (8), e21931, 2011
792011
Designing peptides on a quantum computer
VK Mulligan, H Melo, HI Merritt, S Slocum, BD Weitzner, AM Watkins, ...
BioRxiv, 752485, 2019
522019
Accurate structure prediction of CDR H3 loops enabled by a novel structure-based C-terminal constraint
BD Weitzner, JJ Gray
The Journal of Immunology 198 (1), 505-515, 2017
452017
Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites
P Hosseinzadeh, PR Watson, TW Craven, X Li, S Rettie, F Pardo-Avila, ...
Nature Communications 12 (1), 3384, 2021
442021
A computational method for design of connected catalytic networks in proteins
BD Weitzner, Y Kipnis, AG Daniel, D Hilvert, D Baker
Protein Science 28 (12), 2036-2041, 2019
332019
Better together: Elements of successful scientific software development in a distributed collaborative community
J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ...
PLoS computational biology 16 (5), e1007507, 2020
322020
An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases
B Weitzner, T Meehan, Q Xu, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 75 (2), 289-295, 2009
222009
A framework to simplify combined sampling strategies in Rosetta
JR Porter, BD Weitzner, OF Lange
PLOS one 10 (9), e0138220, 2015
152015
The influence of proline isomerization on potency and stability of anti-HIV antibody 10E8
M Guttman, NN Padte, Y Huang, J Yu, GJ Rocklin, BD Weitzner, M Scian, ...
Scientific reports 10 (1), 14313, 2020
142020
PyRosetta Jupyter notebooks teach biomolecular structure prediction and design
KH Le, J Adolf-Bryfogle, JC Klima, S Lyskov, JW Labonte, S Bertolani, ...
The Biophysicist 2 (1), 108-122, 2021
132021
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