Follow
Hongyi Xin
Title
Cited by
Cited by
Year
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies
JS Kim, D Senol Cali, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ...
BMC genomics 19, 23-40, 2018
1952018
Linearly compressed pages: A low-complexity, low-latency main memory compression framework
G Pekhimenko, V Seshadri, Y Kim, H Xin, O Mutlu, PB Gibbons, ...
Proceedings of the 46th Annual IEEE/ACM International Symposium on …, 2013
1902013
Expert consensus on the metaverse in medicine
D Yang, J Zhou, R Chen, Y Song, Z Song, X Zhang, Q Wang, K Wang, ...
Clinical eHealth 5, 1-9, 2022
1742022
Accelerating read mapping with FastHASH
H Xin, D Lee, F Hormozdiari, S Yedkar, O Mutlu, C Alkan
BMC genomics 14, 1-13, 2013
1582013
GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping
M Alser, H Hassan, H Xin, O Ergin, O Mutlu, C Alkan
Bioinformatics 33 (21), 3355-3363, 2017
1192017
Deep-learning-based prediction of late age-related macular degeneration progression
Q Yan, DE Weeks, H Xin, A Swaroop, EY Chew, H Huang, Y Ding, ...
Nature machine intelligence 2 (2), 141-150, 2020
1162020
Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping
H Xin, J Greth, J Emmons, G Pekhimenko, C Kingsford, C Alkan, O Mutlu
Bioinformatics 31 (10), 1553-1560, 2015
842015
A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies
Z Sun, L Chen, H Xin, Y Jiang, Q Huang, AR Cillo, T Tabib, JK Kolls, ...
Nature communications 10 (1), 1649, 2019
712019
Mitigating prefetcher-caused pollution using informed caching policies for prefetched blocks
V Seshadri, S Yedkar, H Xin, O Mutlu, PB Gibbons, MA Kozuch, TC Mowry
ACM Transactions on Architecture and Code Optimization (TACO) 11 (4), 1-22, 2015
712015
BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data
X Wang, Z Sun, Y Zhang, Z Xu, H Xin, H Huang, RH Duerr, K Chen, ...
Nucleic acids research 48 (11), 5814-5824, 2020
552020
Optimal seed solver: optimizing seed selection in read mapping
H Xin, S Nahar, R Zhu, J Emmons, G Pekhimenko, C Kingsford, C Alkan, ...
Bioinformatics 32 (11), 1632-1642, 2016
492016
Soda: Detecting covid-19 in chest x-rays with semi-supervised open set domain adaptation
J Zhou, B Jing, Z Wang, H Xin, H Tong
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (5 …, 2021
472021
A case for unlimited watchpoints
JL Greathouse, H Xin, Y Luo, T Austin
ACM SIGPLAN Notices 47 (4), 159-172, 2012
462012
GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing
H Xin, Q Lian, Y Jiang, J Luo, X Wang, C Erb, Z Xu, X Zhang, ...
Genome biology 21, 1-35, 2020
412020
Artificial-cell-type aware cell-type classification in CITE-seq
Q Lian, H Xin, J Ma, L Konnikova, W Chen, J Gu, K Chen
Bioinformatics 36 (Supplement_1), i542-i550, 2020
142020
Fast and accurate mapping of Complete Genomics reads
D Lee, F Hormozdiari, H Xin, F Hach, O Mutlu, C Alkan
Methods 79, 3-10, 2015
142015
TIST: transcriptome and histopathological image integrative analysis for spatial transcriptomics
Y Shan, Q Zhang, W Guo, Y Wu, Y Miao, H Xin, Q Lian, J Gu
Genomics, Proteomics and Bioinformatics 20 (5), 974-988, 2022
132022
Emerging artificial intelligence methods for fighting lung cancer: A survey
J Zhou, H Xin
Clinical eHealth 5, 19-34, 2022
82022
Adaptively accelerating map-reduce/spark with GPUs: A case study
KR Jayaram, A Gandhi, H Xin, S Tao
2019 IEEE International Conference on Autonomic Computing (ICAC), 105-114, 2019
82019
The microbiota regulates hematopoietic stem and progenitor cell development by mediating inflammatory signals in the niche
D Zhong, H Jiang, C Zhou, A Ahmed, H Li, X Wei, Q Lian, M Tastemel, ...
Cell Reports 42 (2), 2023
72023
The system can't perform the operation now. Try again later.
Articles 1–20