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Jordan Douglas
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Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand
JL Geoghegan, X Ren, M Storey, J Hadfield, L Jelley, S Jefferies, ...
Nature communications 11 (1), 1-7, 2020
962020
Characterisation of assembly and ubiquitylation by the RBCC motif of Trim5α
JR Keown, JX Yang, J Douglas, DC Goldstone
Scientific reports 6 (1), 1-11, 2016
272016
Automated transformation of PDDL representations
P Riddle, M Barley, S Franco, J Douglas
International Symposium on Combinatorial Search 6 (1), 2015
192015
Use of genomics to track coronavirus disease outbreaks, New Zealand
JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ...
Emerging infectious diseases 27 (5), 1317, 2021
18*2021
Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model
J Douglas, R Zhang, R Bouckaert
PLoS computational biology 17 (2), e1008322, 2021
152021
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations
J Douglas, FK Mendes, R Bouckaert, D Xie, CL Jiménez-Silva, ...
Virus evolution 7 (2), veab052, 2021
132021
Real-Time Genomics for Tracking Severe Acute Respiratory Syndrome Coronavirus 2 Border Incursions after Virus Elimination, New Zealand
J Douglas, JL Geoghegan, J Hadfield, R Bouckaert, M Storey, X Ren, ...
Emerging Infectious Diseases 27 (9), 2361, 2021
11*2021
Improving performance by reformulating PDDL into a bagged representation
P Riddle, J Douglas, M Barley, S Franco
Proceedings of the 8th Workshop on Heuristic Search for Domain-independent …, 2016
102016
UglyTrees: a browser-based multispecies coalescent tree visualizer
J Douglas
Bioinformatics 37 (2), 268-269, 2021
62021
Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene
J Douglas, AJ Drummond, RL Kingston
Virus Evolution 7 (1), veab028, 2021
62021
Bayesian inference and comparison of stochastic transcription elongation models
J Douglas, R Kingston, AJ Drummond
PLoS computational biology 16 (2), e1006717, 2020
52020
Re-emergence of community transmission in Aotearoa New Zealand-Genomic overview of the Auckland Outbreak.(Accessed 28 October 2020). ESR
J Hadfield, J Douglas, J Geoghegan, M Storey, X Ren, N Freed, ...
52020
Analysis of bagged representations in PDDL
P Riddle, M Barley, S Franco, J Douglas
Heuristics and search for domain-independent planning, 2015
42015
Meta-search through the space of representations and heuristics on a problem by problem basis
R Fuentetaja, M Barley, D Borrajo, J Douglas, S Franco, P Riddle
Proceedings of the AAAI Conference on Artificial Intelligence 32 (1), 2018
32018
Bagged representations in PDDL
P Riddle, M Barley, S Franco, J Douglas
4th Workshop on the Intl Planning Competition, 17-23, 2015
22015
StarBeast3: Adaptive Parallelized Bayesian Inference under the Multispecies Coalescent
J Douglas, CL Jiménez-Silva, R Bouckaert
Systematic Biology, 2022
1*2022
PEACH Tree: A Multiple Sequence Alignment and Tree Display Tool for Epidemiologists
J Douglas, D Welch
arXiv preprint arXiv:2112.07422, 2021
12021
Approximate Bayesian computation of transcriptional pausing mechanisms
J Douglas, R Kingston, AJ Drummond
BioRxiv, 748210, 2019
12019
From elimination to suppression: genomic epidemiology of a large Delta SARS-CoV-2 outbreak in Aotearoa New Zealand
L Jelley, J Douglas, X Ren, D Winter, A McNeill, S Huang, N French, ...
medRxiv, 2022
2022
Quantitatively defining species boundaries with more efficiency and more biological realism
J Douglas, R Bouckaert
bioRxiv, 2022
2022
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Articles 1–20