Daniel Caffrey
Title
Cited by
Cited by
Year
AIM2 recognizes cytosolic dsDNA and forms a caspase-1-activating inflammasome with ASC
V Hornung, A Ablasser, M Charrel-Dennis, F Bauernfeind, G Horvath, ...
Nature 458 (7237), 514-518, 2009
18882009
LPS-TLR4 signaling to IRF-3/7 and NF-κB involves the toll adapters TRAM and TRIF
KA Fitzgerald, DC Rowe, BJ Barnes, DR Caffrey, A Visintin, E Latz, ...
The Journal of experimental medicine 198 (7), 1043-1055, 2003
13182003
A long noncoding RNA mediates both activation and repression of immune response genes
S Carpenter, D Aiello, MK Atianand, EP Ricci, P Gandhi, LL Hall, M Byron, ...
science 341 (6147), 789-792, 2013
6332013
Structure-based maximal affinity model predicts small-molecule druggability
AC Cheng, RG Coleman, KT Smyth, Q Cao, P Soulard, DR Caffrey, ...
Nature biotechnology 25 (1), 71-75, 2007
5542007
Are protein–protein interfaces more conserved in sequence than the rest of the protein surface?
DR Caffrey, S Somaroo, JD Hughes, J Mintseris, ES Huang
Protein Science 13 (1), 190-202, 2004
3732004
Genomic insights into the Ixodes scapularis tick vector of Lyme disease
M Gulia-Nuss, AB Nuss, JM Meyer, DE Sonenshine, RM Roe, ...
Nature communications 7 (1), 1-13, 2016
2512016
A long noncoding RNA lincRNA-EPS acts as a transcriptional brake to restrain inflammation
MK Atianand, W Hu, AT Satpathy, Y Shen, EP Ricci, ...
Cell 165 (7), 1672-1685, 2016
2102016
Of mice and man: TLR11 (finally) finds profilin
FN Lauw, DR Caffrey, DT Golenbock
Trends in immunology 26 (10), 509-511, 2005
1522005
Long noncoding RNAs in innate and adaptive immunity
KA Fitzgerald, DR Caffrey
Current opinion in immunology 26, 140-146, 2014
1472014
The evolution of the MAP kinase pathways: coduplication of interacting proteins leads to new signaling cascades
DR Caffrey, LA O'neill, DC Shields
Journal of molecular evolution 49 (5), 567-582, 1999
1331999
Immunobiology of long noncoding RNAs
MK Atianand, DR Caffrey, KA Fitzgerald
Annual review of immunology 35, 177-198, 2017
1172017
Influenza virus drug resistance: a time-sampled population genetics perspective
M Foll, YP Poh, N Renzette, A Ferrer-Admetlla, C Bank, H Shim, ...
PLoS Genetics 10 (2), 2014
952014
siRNA off-target effects can be reduced at concentrations that match their individual potency
DR Caffrey, J Zhao, Z Song, ME Schaffer, SA Haney, RR Subramanian, ...
PloS one 6 (7), 2011
902011
The Genome of Anopheles darlingi , the main neotropical malaria vector
O Marinotti, GC Cerqueira, LGP de Almeida, MIT Ferro, ELS Loreto, ...
Nucleic acids research 41 (15), 7387-7400, 2013
862013
Cutting edge: a natural antisense transcript, AS-IL1α, controls inducible transcription of the proinflammatory cytokine IL-1α
J Chan, M Atianand, Z Jiang, S Carpenter, D Aiello, R Elling, ...
The Journal of Immunology 195 (4), 1359-1363, 2015
702015
PFAAT version 2.0: a tool for editing, annotating, and analyzing multiple sequence alignments
DR Caffrey, PH Dana, V Mathur, M Ocano, EJ Hong, YE Wang, ...
BMC bioinformatics 8 (1), 381, 2007
592007
Evolution of the influenza A virus genome during development of oseltamivir resistance in vitro
N Renzette, DR Caffrey, KB Zeldovich, P Liu, GR Gallagher, D Aiello, ...
Journal of virology 88 (1), 272-281, 2014
372014
Wrapping up BLAST and other applications for use on Unix clusters
K Hokamp, DC Shields, KH Wolfe, DR Caffrey
Bioinformatics 19 (3), 441-442, 2003
362003
Distinct cellular origins for serotonin-expressing and enterochromaffin-like cells in the gastric corpus
HJ Li, B Johnston, D Aiello, DR Caffrey, M Giel–Moloney, G Rindi, ...
Gastroenterology 146 (3), 754-764. e3, 2014
332014
A balance between inhibitor binding and substrate processing confers influenza drug resistance
L Jiang, P Liu, C Bank, N Renzette, K Prachanronarong, LS Yilmaz, ...
Journal of molecular biology 428 (3), 538-553, 2016
272016
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