| Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... Cell reports 18 (1), 248-262, 2017 | 3773 | 2017 |
| Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data F Finotello, C Mayer, C Plattner, G Laschober, D Rieder, H Hackl, ... Genome medicine 11 (1), 34, 2019 | 1168 | 2019 |
| Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ... Bioinformatics 35 (14), i436-i445, 2019 | 768 | 2019 |
| Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism J Fadista, P Vikman, EO Laakso, IG Mollet, JL Esguerra, J Taneera, ... Proceedings of the National Academy of Sciences 111 (38), 13924-13929, 2014 | 507 | 2014 |
| Quantifying tumor-infiltrating immune cells from transcriptomics data F Finotello, Z Trajanoski Cancer Immunology, Immunotherapy 67 (7), 1031-1040, 2018 | 375 | 2018 |
| Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis F Finotello, B Di Camillo Briefings in functional genomics 14 (2), 130-142, 2015 | 326 | 2015 |
| Mitochondrial DNA drives abscopal responses to radiation that are inhibited by autophagy T Yamazaki, A Kirchmair, AI Sato, A Buqué, M Rybstein, G Petroni, N Bloy, ... Nature immunology 21 (10), 1160-1171, 2020 | 299 | 2020 |
| Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution M Efremova, D Rieder, V Klepsch, P Charoentong, F Finotello, H Hackl, ... Nature Communications 9 (1), 32, 2018 | 299 | 2018 |
| Computational genomics tools for dissecting tumour-immune cell interactions H Hackl, P Charoentong, F Finotello, Z Trajanoski Nature Reviews Genetics 17 (8), 441-458, 2016 | 279 | 2016 |
| Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature Methods 13 (4), 310-318, 2016 | 264 | 2016 |
| High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer S Salcher, G Sturm, L Horvath, G Untergasser, C Kuempers, G Fotakis, ... Cancer cell 40 (12), 1503-1520. e8, 2022 | 248 | 2022 |
| Neoantigens generated by individual mutations and their role in cancer immunity and immunotherapy M Efremova, F Finotello, D Rieder, Z Trajanoski Frontiers in immunology 8, 1679, 2017 | 227 | 2017 |
| Pancancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade. Cell Rep. 2017; 18: 248–62 P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... | 221 | 2010 |
| Immunedeconv: an R package for unified access to computational methods for estimating immune cell fractions from bulk RNA-sequencing data G Sturm, F Finotello, M List Bioinformatics for cancer immunotherapy: methods and protocols, 223-232, 2020 | 203 | 2020 |
| Deconvoluting tumor-infiltrating immune cells from RNA-seq data using quanTIseq C Plattner, F Finotello, D Rieder Methods in enzymology 636, 261-285, 2020 | 181 | 2020 |
| A genome-wide association study of diabetic kidney disease in subjects with type 2 diabetes NR Van Zuydam, E Ahlqvist, N Sandholm, H Deshmukh, NW Rayner, ... Diabetes 67 (7), 1414-1427, 2018 | 181 | 2018 |
| Deviations of the immune cell landscape between healthy liver and hepatocellular carcinoma N Rohr-Udilova, F Klinglmüller, R Schulte-Hermann, J Stift, M Herac, ... Scientific Reports 8 (1), 6220, 2018 | 173 | 2018 |
| Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data G Sturm, T Szabo, G Fotakis, M Haider, D Rieder, Z Trajanoski, F Finotello Bioinformatics 36 (18), 4817-4818, 2020 | 171 | 2020 |
| Measuring the diversity of the human microbiota with targeted next-generation sequencing F Finotello, E Mastrorilli, B Di Camillo Briefings in bioinformatics 19 (4), 679-692, 2018 | 166 | 2018 |
| The scverse project provides a computational ecosystem for single-cell omics data analysis I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ... Nature biotechnology 41 (5), 604-606, 2023 | 160 | 2023 |
Zlatko TrajanoskiBiocenter, Institute of Bioinformatics, Medical University of InnsbruckVerified email at i-med.ac.at
