| Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... Cell Reports 18 (1), 248-262, 2017 | 393 | 2017 |
| Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism J Fadista, P Vikman, EO Laakso, IG Mollet, JL Esguerra, J Taneera, ... Proceedings of the National Academy of Sciences 111 (38), 13924-13929, 2014 | 259 | 2014 |
| Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature Methods 13 (4), 310-318, 2016 | 151 | 2016 |
| Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis F Finotello, B Di Camillo Briefings in functional genomics 14 (2), 130-142, 2015 | 142 | 2015 |
| Computational genomics tools for dissecting tumour-immune cell interactions H Hackl, P Charoentong, F Finotello, Z Trajanoski Nature Reviews Genetics 17 (8), 441-458, 2016 | 139 | 2016 |
| Neoantigens generated by individual mutations and their role in cancer immunity and immunotherapy M Efremova, F Finotello, D Rieder, Z Trajanoski Frontiers in immunology 8, 1679, 2017 | 85 | 2017 |
| Quantifying tumor-infiltrating immune cells from transcriptomics data F Finotello, Z Trajanoski Cancer Immunology, Immunotherapy 67 (7), 1031-1040, 2018 | 77 | 2018 |
| Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution M Efremova, D Rieder, V Klepsch, P Charoentong, F Finotello, H Hackl, ... Nature Communications 9 (1), 32, 2018 | 52 | 2018 |
| A genome-wide association study of diabetic kidney disease in subjects with type 2 diabetes NR van Zuydam, E Ahlqvist, N Sandholm, H Deshmukh, NW Rayner, ... Diabetes 67 (7), 1414-1427, 2018 | 40 | 2018 |
| TIminer: NGS data mining pipeline for cancer immunology and immunotherapy E Tappeiner, F Finotello, P Charoentong, C Mayer, D Rieder, Z Trajanoski Bioinformatics 33 (19), 3140-3141, 2017 | 38 | 2017 |
| Reducing bias in RNA sequencing data: a novel approach to compute counts F Finotello, E Lavezzo, L Bianco, L Barzon, P Mazzon, P Fontana, ... BMC Bioinformatics 14 (Suppl 1), S7, 2014 | 38 | 2014 |
| Deviations of the immune cell landscape between healthy liver and hepatocellular carcinoma N Rohr-Udilova, F Klinglmüller, R Schulte-Hermann, J Stift, M Herac, ... Scientific Reports 8 (1), 6220, 2018 | 36 | 2018 |
| Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ... Bioinformatics 35 (14), i436-i445, 2019 | 29 | 2019 |
| Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data F Finotello, E Lavezzo, P Fontana, D Peruzzo, A Albiero, L Barzon, ... Briefings in bioinformatics 13 (3), 269-280, 2012 | 29 | 2012 |
| Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data F Finotello, C Mayer, C Plattner, G Laschober, D Rieder, H Hackl, ... Genome medicine 11 (1), 34, 2019 | 27 | 2019 |
| Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak E Lavezzo, S Toppo, E Franchin, B Di Camillo, F Finotello, M Falda, ... BMC Infectious Diseases 13 (1), 554, 2013 | 24 | 2013 |
| New strategies for cancer immunotherapy: targeting regulatory T cells F Finotello, Z Trajanoski Genome Medicine 9 (1), 10, 2017 | 22 | 2017 |
| FunPat: function-based pattern analysis on RNA-seq time series data T Sanavia, F Finotello, B Di Camillo BMC genomics 16 (6), S2, 2015 | 21 | 2015 |
| Multi-omics profiling of the tumor microenvironment: paving the way to precision immuno-oncology F Finotello, F Eduati Frontiers in oncology 8, 2018 | 20 | 2018 |
| Next-generation computational tools for interrogating cancer immunity F Finotello, D Rieder, H Hackl, Z Trajanoski Nature Reviews Genetics, 1-23, 2019 | 19 | 2019 |
Zlatko TrajanoskiMedical University of InnsbruckVerified email at i-med.ac.at
