David Welch - Google Scholar Citations

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Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerified email at cs.auckland.ac.nz
Tanja StadlerETH ZurichVerified email at env.ethz.ch
Alexandra "Sasha" GavryushkinaPostdoctoral fellow at University of OtagoVerified email at otago.ac.nz
Tina ToniImperial College London, Massachusetts Institute of TechnologyVerified email at mit.edu
Geoff NichollsAssociate Professor of Statistics, University of OxfordVerified email at stats.ox.ac.uk
Timothy G VaughanETH Zürich, SwitzerlandVerified email at bsse.ethz.ch
Tracy A. HeathAssistant Professor, Iowa State UniversityVerified email at iastate.edu
Daniel KsepkaCurator, Bruce MuseumVerified email at brucemuseum.org
Quentin AtkinsonUniversity of AucklandVerified email at auckland.ac.nz
Russell D GrayManaging Director, Max Planck Institute for the Science of Human History and Professor of PsychologyVerified email at auckland.ac.nz
Bryan GrenfellKathryn Briger and Sarah Fenton Professor of Ecology and Public Affairs, Princeton UniversityVerified email at princeton.edu
Beth ShapiroUC Santa Cruz Genomics Institute; Ecology and Evolutionary Biology, UC Santa CruzVerified email at ucsc.edu
Conrad StackMars, IncorporatedVerified email at effem.com
Denise KühnertMax Planck Institute for the Science of Human HistoryVerified email at shh.mpg.de
Shweta BansalAssociate Professor, Georgetown UniversityVerified email at georgetown.edu
Stephane GuindonCNRS, Montpellier, FranceVerified email at lirmm.fr
Raazesh SainudiinDepartment of Mathematics, Uppsala UniversityVerified email at math.uu.se
Allen RodrigoThe Australian National UniversityVerified email at anu.edu.au
Patrick BiggsAssoc. Prof. of Genomics & Computational Biology, Massey UniversityVerified email at massey.ac.nz
Nigel FrenchDistinguished Professor of Veterinary Public Health, Massey University.Verified email at massey.ac.nz

David Welch

Senior Lecturer, Computational Evolution Group, Dept of Computer Science, University of Auckland

Verified email at auckland.ac.nz - Homepage

Bayesian statistics epidemiology phylogenetics networks sampling algorithms


Title	Cited by	Year
Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems T Toni, D Welch, N Strelkowa, A Ipsen, MPH Stumpf Journal of the Royal Society Interface 6 (31), 187-202, 2008	998	2008
Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration A Gavryushkina, D Welch, T Stadler, AJ Drummond PLoS computational biology 10 (12), e1003919, 2014	137	2014
Bayesian total-evidence dating reveals the recent crown radiation of penguins A Gavryushkina, TA Heath, DT Ksepka, T Stadler, D Welch, AJ Drummond Systematic biology 66 (1), 57-73, 2017	106	2017
From words to dates: water into wine, mathemagic or phylogenetic inference? Q Atkinson, G Nicholls, D Welch, R Gray Transactions of the Philological Society 103 (2), 193-219, 2005	105	2005
Efficient Bayesian inference under the structured coalescent TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond Bioinformatics 30 (16), 2272-2279, 2014	62	2014
Bayesian inference for contact networks given epidemic data C Groendyke, D Welch, DR Hunter Scandinavian Journal of Statistics 38 (3), 600-616, 2011	59	2011
Statistical inference to advance network models in epidemiology D Welch, S Bansal, DR Hunter Epidemics 3 (1), 38-45, 2011	59	2011
A network‐based analysis of the 1861 Hagelloch measles data C Groendyke, D Welch, DR Hunter Biometrics 68 (3), 755-765, 2012	54	2012
Protocols for sampling viral sequences to study epidemic dynamics JC Stack, JD Welch, MJ Ferrari, BU Shapiro, BT Grenfell Journal of the Royal Society Interface 7 (48), 1119-1127, 2010	44	2010
Integrating genealogy and epidemiology: the ancestral infection and selection graph as a model for reconstructing host virus histories D Welch, GK Nicholls, A Rodrigo, W Solomon Theoretical population biology 68 (1), 65-75, 2005	21	2005
Is network clustering detectable in transmission trees? D Welch Viruses 3 (6), 659-676, 2011	14	2011
Recursive algorithms for phylogenetic tree counting A Gavryushkina, D Welch, AJ Drummond Algorithms for Molecular Biology 8 (1), 26, 2013	11	2013
Inferring ancestral recombination graphs from bacterial genomic data TG Vaughan, D Welch, AJ Drummond, PJ Biggs, T George, NP French Genetics 205 (2), 857-870, 2017	9	2017
The transmission process: A combinatorial stochastic process for the evolution of transmission trees over networks R Sainudiin, D Welch Journal of theoretical biology 410, 137-170, 2016	8*	2016
Demographic inference under the coalescent in a spatial continuum S Guindon, H Guo, D Welch Theoretical population biology 111, 43-50, 2016	8	2016
Modelling competition and dispersal in a statistical phylogeographic framework L Ranjard, D Welch, M Paturel, S Guindon Systematic biology 63 (5), 743-752, 2014	6	2014
Estimating Epidemic Incidence and Prevalence from Genomic Data TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ... Molecular Biology and Evolution, 2019	4	2019
Estimating epidemic incidence and prevalence from genomic data TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ... bioRxiv, 142570, 2017	4	2017
TraitLab: A MatLab package for fitting and simulating binary tree-like data GK Nicholls, RJ Ryder, D Welch	3	2013
epinet: An R Package to Analyze Epidemics Spread across Contact Networks C Groendyke, D Welch Journal of Statistical Software 83 (11), 1-22, 2018	2	2018

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