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Petko (Pete) Fiziev
Petko (Pete) Fiziev
Other namesPetko Plamenov Fiziev
Illumina Artificial Intelligence Lab
Verified email at illumina.com - Homepage
Title
Cited by
Cited by
Year
A combined computational-experimental approach predicts human microRNA targets
M Kiriakidou, PT Nelson, A Kouranov, P Fitziev, C Bouyioukos, ...
Genes & development 18 (10), 1165-1178, 2004
10822004
Cooperative binding of transcription factors orchestrates reprogramming
C Chronis*, P Fiziev*, B Papp, S Butz, G Bonora, S Sabri, J Ernst, K Plath
Cell 168 (3), 442-459. e20, 2017
4862017
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
W Guo, P Fiziev, W Yan, S Cokus, X Sun, MQ Zhang, PY Chen, ...
BMC genomics 14, 1-8, 2013
3902013
Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire
E Staub, P Fiziev, A Rosenthal, B Hinzmann
Bioessays 26 (5), 567-581, 2004
1282004
Systematic epigenomic analysis reveals chromatin states associated with melanoma progression
P Fiziev*, KC Akdemir*, JP Miller, EZ Keung, NS Samant, S Sharma, ...
Cell reports 19 (4), 875-889, 2017
882017
Dual roles of RNF2 in melanoma progression
K Rai, KC Akdemir, LN Kwong, P Fiziev, CJ Wu, EZ Keung, S Sharma, ...
Cancer discovery 5 (12), 1314-1327, 2015
642015
Mapping molecular landmarks of human skeletal ontogeny and pluripotent stem cell-derived articular chondrocytes
GB Ferguson, B Van Handel, M Bay, P Fiziev, T Org, S Lee, R Shkhyan, ...
Nature communications 9 (1), 3634, 2018
472018
The landscape of tolerated genetic variation in humans and primates
H Gao, T Hamp, J Ede, JG Schraiber, J McRae, M Singer-Berk, Y Yang, ...
Science 380 (6648), eabn8153, 2023
422023
DIANA-EST: a statistical analysis
AG Hatzigeorgiou, P Fiziev, M Reczko
Bioinformatics 17 (10), 913-919, 2001
412001
Finding signal peptides in human protein sequences using recurrent neural networks
M Reczko, P Fiziev, E Staub, A Hatzigeorgiou
International Workshop on Algorithms in Bioinformatics, 60-67, 2002
272002
Rare penetrant mutations confer severe risk of common diseases
PP Fiziev*, J McRae*, JC Ulirsch, JS Dron, T Hamp, Y Yang, ...
Science 380 (6648), eabo1131, 2023
182023
Dual Roles of RNF2 in melanoma progression. Cancer Discov. 2015; 5: 1314–1327. doi: 10.1158/2159-8290
K Rai, KC Akdemir, LN Kwong, P Fiziev, CJ Wu, EZ Keung, S Sharma, ...
CD-15-0493.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0
13
ChromTime: modeling spatio-temporal dynamics of chromatin marks
P Fiziev, J Ernst
Genome biology 19, 1-18, 2018
112018
Algorithms in bioinformatics
M Reczko, E Staub, P Fiziev, A Hatzigeorgiou
Algorithms in bioinformatics, 60-67, 2002
62002
Uniform generation of random directed graphs with prescribed degree sequence
PP Fiziev
Master’s thesis, Max Planck Institute, Germany, 2006
22006
A framework for group-wise summarization and comparison of chromatin state annotations
H Vu, Z Koch, P Fiziev, J Ernst
Bioinformatics 39 (1), btac722, 2023
12023
PrimateAI-3D outperforms AlphaMissense in real-world cohorts
DA Parry, T Bosc, T Hamp, P Fiziev, A Sharma, I Kassam, J McRae, ...
medRxiv, 2024.01. 12.24301193, 2024
2024
Covariate correction including drug use from temporal data
PP Fiziev, JF McRAE, F Kai-How
US Patent App. 17/968,766, 2023
2023
Optimized burden test based on nested t-tests that maximize separation between carriers and non-carriers
PP Fiziev, JF McRAE, F Kai-How
US Patent App. 17/968,285, 2023
2023
Rare variant polygenic risk scores
PP Fiziev, JF McRAE, F Kai-How
US Patent App. 17/968,723, 2023
2023
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