| Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential L Wampach, A Heintz-Buschart, JV Fritz, J Ramiro-Garcia, J Habier, ... Nature communications 9 (1), 5091, 2018 | 271 | 2018 |
| NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes J Ramiro-Garcia, GDA Hermes, C Giatsis, D Sipkema, EG Zoetendal, ... F1000Research 5, 2016 | 209 | 2016 |
| A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets MM Leimena, J Ramiro-Garcia, M Davids, B van den Bogert, H Smidt, ... BMC genomics 14, 1-14, 2013 | 128 | 2013 |
| To pool or not to pool? Impact of the use of individual and pooled fecal samples for in vitro fermentation studies M Aguirre, J Ramiro-Garcia, ME Koenen, K Venema Journal of microbiological methods 107, 1-7, 2014 | 109 | 2014 |
| Probiotic legacy effects on gut microbial assembly in tilapia larvae C Giatsis, D Sipkema, J Ramiro-Garcia, GM Bacanu, J Abernathy, ... Scientific reports 6 (1), 33965, 2016 | 68 | 2016 |
| Integrated in vitro and in silico modeling delineates the molecular effects of a synbiotic regimen on colorectal-cancer-derived cells K Greenhalgh, J Ramiro-Garcia, A Heinken, P Ullmann, T Bintener, ... Cell reports 27 (5), 1621-1632. e9, 2019 | 66 | 2019 |
| Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions D Versluis, MM D’Andrea, J Ramiro Garcia, MM Leimena, F Hugenholtz, ... Scientific reports 5 (1), 11981, 2015 | 61 | 2015 |
| Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol S Atashgahi, Y Lu, Y Zheng, E Saccenti, M Suarez‐Diez, J Ramiro‐Garcia, ... Environmental microbiology 19 (3), 968-981, 2017 | 58 | 2017 |
| Effect of nickel and cobalt on methanogenic enrichment cultures and role of biogenic sulfide in metal toxicity attenuation LM Paulo, J Ramiro-Garcia, S van Mourik, AJM Stams, DZ Sousa Frontiers in microbiology 8, 264275, 2017 | 53 | 2017 |
| A novel biomarker panel for irritable bowel syndrome and the application in the general population Z Mujagic, EF Tigchelaar, A Zhernakova, T Ludwig, J Ramiro-Garcia, ... Scientific reports 6 (1), 26420, 2016 | 53 | 2016 |
| Changes in rumen microbiota composition and in situ degradation kinetics during the dry period and early lactation as affected by rate of increase of concentrate allowance K Dieho, B Van den Bogert, G Henderson, A Bannink, J Ramiro-Garcia, ... Journal of Dairy Science 100 (4), 2695-2710, 2017 | 39 | 2017 |
| Growth and activity of ANME clades with different sulfate and sulfide concentrations in the presence of methane PH Timmers, HCA Widjaja-Greefkes, J Ramiro-Garcia, CM Plugge, ... Frontiers in microbiology 6, 157118, 2015 | 35 | 2015 |
| Dietary protein sources differentially affect microbiota, mTOR activity and transcription of mTOR signaling pathways in the small intestine SK Kar, AJM Jansman, N Benis, J Ramiro-Garcia, D Schokker, L Kruijt, ... PLoS One 12 (11), e0188282, 2017 | 30 | 2017 |
| Microbial community redundancy and resilience underpins high-rate anaerobic treatment of dairy-processing wastewater at ambient temperatures LM Paulo, J Castilla-Archilla, J Ramiro-Garcia, JA Escamez-Picón, ... Frontiers in Bioengineering and Biotechnology 8, 192, 2020 | 27 | 2020 |
| Gene probing reveals the widespread distribution, diversity and abundance of isoprene-degrading bacteria in the environment O Carrión, NL Larke-Mejía, L Gibson, M Farhan Ul Haque, ... Microbiome 6, 1-11, 2018 | 27 | 2018 |
| Development of an enhanced chain elongation process for caproic acid production from waste-derived lactic acid and butyric acid C orline Nzeteu, F Coelho, AC Trego, F Abram, J Ramiro-Garcia, L Paulo, ... Journal of Cleaner Production 338, 130655, 2022 | 26 | 2022 |
| Dechlorination of three tetrachlorobenzene isomers by contaminated harbor sludge-derived enrichment cultures follows thermodynamically favorable reactions Y Lu, J Ramiro-Garcia, P Vandermeeren, S Herrmann, D Cichocka, ... Applied Microbiology and Biotechnology 101, 2589-2601, 2017 | 24 | 2017 |
| Geochemical parameters and reductive dechlorination determine aerobic cometabolic vs aerobic metabolic vinyl chloride biodegradation at oxic/anoxic interface of hyporheic zones S Atashgahi, Y Lu, J Ramiro-Garcia, P Peng, F Maphosa, D Sipkema, ... Environmental Science & Technology 51 (3), 1626-1634, 2017 | 21 | 2017 |
| Metagenomic-and cultivation-based exploration of anaerobic chloroform biotransformation in hypersaline sediments as natural source of chloromethanes P Peng, Y Lu, TNP Bosma, I Nijenhuis, B Nijsse, SA Shetty, A Ruecker, ... Microorganisms 8 (5), 665, 2020 | 12 | 2020 |
| Occupancy strongly influences faecal microbial composition of wild lemurs A Umanets, I de Winter, F IJdema, J Ramiro-Garcia, P van Hooft, ... FEMS microbiology ecology 94 (3), fiy017, 2018 | 11 | 2018 |
