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Miguel Arenas
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Recombination in viruses: mechanisms, methods of study, and evolutionary consequences
M Pérez-Losada, M Arenas, JC Galán, F Palero, F González-Candelas
Infection, Genetics and Evolution 30, 296-307, 2015
4092015
Consequences of range contractions and range shifts on molecular diversity
M Arenas, N Ray, M Currat, L Excoffier
Molecular biology and evolution 29 (1), 207-218, 2012
2582012
Trends in substitution models of molecular evolution
M Arenas
Frontiers in genetics 6, 319, 2015
1942015
Genetic consequences of habitat fragmentation during a range expansion
S Mona, N Ray, M Arenas, L Excoffier
Heredity 112 (3), 291-299, 2014
1302014
Forensic genetics and genomics: Much more than just a human affair
M Arenas, F Pereira, M Oliveira, N Pinto, AM Lopes, V Gomes, ...
PLoS genetics 13 (9), e1006960, 2017
1142017
The effect of recombination on the reconstruction of ancestral sequences
M Arenas, D Posada
Genetics 184 (4), 1133-1139, 2010
1012010
Microbial sequence typing in the genomic era
M Pérez-Losada, M Arenas, E Castro-Nallar
Infection, Genetics and Evolution 63, 346-359, 2018
802018
Coalescent simulation of intracodon recombination
M Arenas, D Posada
Genetics 184 (2), 429-437, 2010
782010
Simulation of molecular data under diverse evolutionary scenarios
M Arenas
PLoS computational biology 8 (5), e1002495, 2012
672012
Survey of Crimean-Congo hemorrhagic fever enzootic focus, Spain, 2011–2015
A Negredo, MÁ Habela, ER de Arellano, F Diez, F Lasala, P López, ...
Emerging Infectious Diseases 25 (6), 1177, 2019
642019
Ecological connectivity shapes quasispecies structure of RNA viruses in an Antarctic lake
A López‐Bueno, A Rastrojo, R Peiró, M Arenas, A Alcamí
Molecular Ecology 24 (19), 4812-4825, 2015
642015
Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography
M Arenas, D Posada
BMC bioinformatics 8, 1-4, 2007
632007
High-throughput sequencing (HTS) for the analysis of viral populations
M Pérez-Losada, M Arenas, JC Galán, MA Bracho, J Hillung, ...
Infection, Genetics and Evolution 80, 104208, 2020
612020
Influence of admixture and paleolithic range contractions on current European diversity gradients
M Arenas, O François, M Currat, N Ray, L Excoffier
Molecular biology and evolution 30 (1), 57-61, 2013
552013
SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal
M Currat, M Arenas, CS Quilodran, L Excoffier, N Ray
Bioinformatics 35 (21), 4480-4483, 2019
522019
Maximum-likelihood phylogenetic inference with selection on protein folding stability
M Arenas, A Sánchez-Cobos, U Bastolla
Molecular biology and evolution 32 (8), 2195-2207, 2015
512015
Long-distance dispersal shaped patterns of human genetic diversity in Eurasia
I Alves, M Arenas, M Currat, A Sramkova Hanulova, VC Sousa, N Ray, ...
Molecular biology and evolution 33 (4), 946-958, 2016
492016
Protein evolution along phylogenetic histories under structurally constrained substitution models
M Arenas, HG Dos Santos, D Posada, U Bastolla
Bioinformatics 29 (23), 3020-3028, 2013
482013
ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding Stability
M Arenas, CC Weber, DA Liberles, U Bastolla
Systematic biology 66 (6), 1054-1064, 2017
472017
Mutation and recombination in pathogen evolution: Relevance, methods and controversies
M Arenas, NM Araujo, C Branco, N Castelhano, E Castro-Nallar, ...
Infection, Genetics and Evolution 63, 295-306, 2018
432018
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