| Comparative genomics reveals insights into avian genome evolution and adaptation G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ... Science 346 (6215), 1311-1320, 2014 | 1038 | 2014 |
| Issues with SARS-CoV-2 sequencing data N De Maio, C Walker, R Borges, L Weilguny, G Slodkowicz, N Goldman | 122 | 2020 |
| Stability of SARS-CoV-2 phylogenies Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ... PLoS genetics 16 (11), e1009175, 2020 | 96 | 2020 |
| Measuring phylogenetic signal between categorical traits and phylogenies R Borges, JP Machado, C Gomes, AP Rocha, A Antunes Bioinformatics 35 (11), 1862-1869, 2019 | 94 | 2019 |
| Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds R Borges, I Khan, WE Johnson, MTP Gilbert, G Zhang, ED Jarvis, ... BMC genomics 16, 1-14, 2015 | 65 | 2015 |
| Low Genetic Diversity and High Invasion Success of Corbicula fluminea (Bivalvia, Corbiculidae) (Müller, 1774) in Portugal C Gomes, R Sousa, T Mendes, R Borges, P Vilares, V Vasconcelos, ... PLoS One 11 (7), e0158108, 2016 | 62 | 2016 |
| Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies C Vlachos, C Burny, M Pelizzola, R Borges, A Futschik, R Kofler, ... Genome biology 20, 1-11, 2019 | 33 | 2019 |
| Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments R Borges, WE Johnson, SJ O’Brien, C Gomes, CP Heesy, A Antunes BMC genomics 19, 1-12, 2018 | 32 | 2018 |
| The role of gene duplication and unconstrained selective pressures in the melanopsin gene family evolution and vertebrate circadian rhythm regulation R Borges, WE Johnson, SJ O’Brien, V Vasconcelos, A Antunes PLoS One 7 (12), e52413, 2012 | 32 | 2012 |
| Masking strategies for SARS-CoV-2 alignments N De Maio, C Walker, R Borges, L Weilguny, G Slodkowicz, N Goldman | 31 | 2020 |
| Quantifying GC-biased gene conversion in great ape genomes using polymorphism-aware models R Borges, GJ Szöllősi, C Kosiol Genetics 212 (4), 1321-1336, 2019 | 29 | 2019 |
| Issues with SARS-CoV-2 sequencing data. 2020 N De Maio, C Walker, R Borges, L Weilguny, G Slodkowicz, N Goldman | 20 | 2020 |
| Avian binocularity and adaptation to nocturnal environments: genomic insights from a highly derived visual phenotype R Borges, J Fonseca, C Gomes, WE Johnson, SJ O’brien, G Zhang, ... Genome Biology and Evolution 11 (8), 2244-2255, 2019 | 15 | 2019 |
| Consistency and identifiability of the polymorphism-aware phylogenetic models R Borges, C Kosiol Journal of Theoretical Biology 486, 110074, 2020 | 8 | 2020 |
| Nucleotide usage biases distort inferences of the species tree R Borges, B Boussau, GJ Szöllősi, C Kosiol Genome biology and evolution 14 (1), evab290, 2022 | 6* | 2022 |
| Bait-ER: A Bayesian method to detect targets of selection in Evolve-and-Resequence experiments C Barata, R Borges, C Kosiol Journal of Evolutionary Biology, 1-16, 2022 | 5 | 2022 |
| The genetic diversity of two invasive sympatric bivalves (Corbicula fluminea and Dreissena polymorpha) from Lakes Garda and Maggiore, Northern Italy C Gomes, T Mendes, R Borges, I Guarneri, I Marchi, L Guilhermino, ... Journal of Great Lakes Research 46 (1), 225-229, 2020 | 3 | 2020 |
| Polymorphism‐aware estimation of species trees and evolutionary forces from genomic sequences with RevBayes R Borges, B Boussau, S Höhna, RJ Pereira, C Kosiol Methods in Ecology and Evolution 13 (11), 2339-2346, 2022 | 2 | 2022 |
| Testing phylogenetic signal with categorical traits and tree uncertainty D Ribeiro, R Borges, AP Rocha, A Antunes Bioinformatics 39 (7), btad433, 2023 | 1 | 2023 |
| Traditional phylogenetic models fail to account for variations in the effective population size R Borges, I Kotari, J Bergman, MA Chase, CF Mugal, C Kosiol bioRxiv, 2022.09. 26.509598, 2022 | | 2022 |
Nick GoldmanEMBL-European Bioinformatics InstituteVerified email at ebi.ac.uk
