| Amber 10 DA Case, TA Darden, TE Cheatham, CL Simmerling, J Wang, RE Duke, ... University of California, 2008 | 12212* | 2008 |
| Suppression of immediate-early viral gene expression by herpesvirus-coded microRNAs: implications for latency E Murphy, J Vaníček, H Robins, T Shenk, AJ Levine Proceedings of the National Academy of Sciences 105 (14), 5453-5458, 2008 | 336 | 2008 |
| Efficient use of accessibility in microRNA target prediction RM Marín, J Vaníček Nucleic acids research 39 (1), 19-29, 2011 | 159 | 2011 |
| A KRAB/KAP1-miRNA cascade regulates erythropoiesis through stage-specific control of mitophagy I Barde, B Rauwel, RM Marin-Florez, A Corsinotti, E Laurenti, S Verp, ... Science 340 (6130), 350-353, 2013 | 123 | 2013 |
| Host microRNA regulation of human cytomegalovirus immediate early protein translation promotes viral latency CM O'Connor, J Vanicek, EA Murphy Journal of virology 88 (10), 5524-5532, 2014 | 121 | 2014 |
| Semiclassical evaluation of quantum fidelity J Vanicek, EJ Heller Physical Review E 68, 056208, 2003 | 112 | 2003 |
| Self-assembled molecular rafts at liquid| liquid interfaces for four-electron oxygen reduction AJ Olaya, D Schaming, PF Brevet, H Nagatani, T Zimmermann, J Vanicek, ... Journal of the American Chemical Society 134 (1), 498-506, 2012 | 103 | 2012 |
| Quantum-instanton evaluation of the kinetic isotope effects J Vaníček, WH Miller, JF Castillo, F Javier Aoiz The Journal of chemical physics 123 (5), 2005 | 87 | 2005 |
| Efficient estimators for quantum instanton evaluation of the kinetic isotope effects: Application to the intramolecular hydrogen transfer in pentadiene J Vaníček, WH Miller The Journal of chemical physics 127 (11), 2007 | 82 | 2007 |
| On-the-fly ab initio semiclassical dynamics: Identifying degrees of freedom essential for emission spectra of oligothiophenes M Wehrle, M Šulc, J Vaníček The Journal of chemical physics 140 (24), 2014 | 75 | 2014 |
| Dephasing representation: Employing the shadowing theorem to calculate quantum correlation functions J Vaníček Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 70 (5 …, 2004 | 67 | 2004 |
| Dephasing representation of quantum fidelity for general pure and mixed states J Vaníček Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 73 (4 …, 2006 | 62 | 2006 |
| Nonadiabatic effects in electronic and nuclear dynamics MP Bircher, E Liberatore, NJ Browning, S Brickel, C Hofmann, A Patoz, ... Structural Dynamics 4 (6), 2017 | 60 | 2017 |
| Searching the coding region for microRNA targets RM Marín, M Šulc, J Vaníček Rna 19 (4), 467-474, 2013 | 58 | 2013 |
| Single-hessian thawed gaussian approximation T Begušić, M Cordova, J Vaníček The Journal of chemical physics 150 (15), 2019 | 56 | 2019 |
| Proton transfer studied using a combined ab initio reactive potential energy surface with quantum path integral methodology KF Wong, JL Sonnenberg, F Paesani, T Yamamoto, J Vanicek, W Zhang, ... Journal of chemical theory and computation 6 (9), 2566-2580, 2010 | 54 | 2010 |
| Path integral evaluation of equilibrium isotope effects T Zimmermann, J Vaníček The Journal of chemical physics 131 (2), 2009 | 53 | 2009 |
| On-the-fly ab initio semiclassical evaluation of vibronic spectra at finite temperature T Begušić, J Vaníček The Journal of Chemical Physics 153 (2), 2020 | 49 | 2020 |
| Kinetic isotope effects and how to describe them K Karandashev, ZH Xu, M Meuwly, J Vaníček, JO Richardson Structural Dynamics 4 (6), 2017 | 47 | 2017 |
| Efficient on-the-fly ab initio semiclassical method for computing time-resolved nonadiabatic electronic spectra with surface hopping or Ehrenfest dynamics T Zimmermann, J Vaníček The Journal of Chemical Physics 141 (13), 2014 | 46 | 2014 |
