Katja Baerenfaller
Katja Baerenfaller
Group lead Molecular Allergology
Verified email at siaf.uzh.ch
Title
Cited by
Cited by
Year
Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics
K Baerenfaller, J Grossmann, MA Grobei, R Hull, M Hirsch-Hoffmann, ...
Science 320 (5878), 938-941, 2008
5352008
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks
S Reiland, G Messerli, K Baerenfaller, B Gerrits, A Endler, J Grossmann, ...
Plant physiology 150 (2), 889-903, 2009
4602009
Systems‐based analysis of Arabidopsis leaf growth reveals adaptation to water deficit
K Baerenfaller, C Massonnet, S Walsh, S Baginsky, P Bühlmann, ...
Molecular systems biology 8 (1), 606, 2012
1882012
Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF)
S Reiland, G Finazzi, A Endler, A Willig, K Baerenfaller, J Grossmann, ...
Proceedings of the National Academy of Sciences 108 (31), 12955-12960, 2011
1432011
5-Fluorouracil is efficiently removed from DNA by the base excision and mismatch repair systems
F Fischer, K Baerenfaller, J Jiricny
Gastroenterology 133 (6), 1858-1868, 2007
1102007
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data
HJ Joshi, M Hirsch-Hoffmann, K Baerenfaller, W Gruissem, S Baginsky, ...
Plant physiology 155 (1), 259-270, 2011
962011
Plastid proteome assembly without Toc159: photosynthetic protein import and accumulation of N-acetylated plastid precursor proteins
S Bischof, K Baerenfaller, T Wildhaber, R Troesch, PA Vidi, B Roschitzki, ...
The Plant cell 23 (11), 3911-3928, 2011
872011
Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation
J Bazin, K Baerenfaller, SJ Gosai, BD Gregory, M Crespi, J Bailey-Serres
Proceedings of the National Academy of Sciences 114 (46), E10018-E10027, 2017
862017
pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana
K Baerenfaller, M Hirsch-Hoffmann, J Svozil, R Hull, D Russenberger, ...
Integrative biology 3 (3), 225-237, 2011
762011
Large-scale proteomics of the cassava storage root and identification of a target gene to reduce postharvest deterioration
H Vanderschuren, E Nyaboga, JS Poon, K Baerenfaller, J Grossmann, ...
The Plant Cell 26 (5), 1913-1924, 2014
722014
Jasmonate controls polypeptide patterning in undamaged tissue in wounded Arabidopsis leaves
A Gfeller, K Baerenfaller, J Loscos, A Chételat, S Baginsky, EE Farmer
Plant Physiology 156 (4), 1797-1807, 2011
722011
A workflow to increase the detection rate of proteins from unsequenced organisms in high‐throughput proteomics experiments
J Grossmann, B Fischer, K Baerenfaller, J Owiti, JM Buhmann, ...
Proteomics 7 (23), 4245-4254, 2007
522007
Taking the next step: building an Arabidopsis information portal
International Arabidopsis Informatics Consortium
The Plant Cell 24 (6), 2248-2256, 2012
362012
Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism
DD Seaton, A Graf, K Baerenfaller, M Stitt, AJ Millar, W Gruissem
Molecular systems biology 14 (3), e7962, 2018
352018
pep2pro: the high-throughput proteomics data processing, analysis, and visualization tool
M Hirsch-Hoffmann, W Gruissem, K Baerenfaller
Frontiers in plant science 3, 123, 2012
302012
Proteasome targeting of proteins in Arabidopsis leaf mesophyll, epidermal and vascular tissues
J Svozil, W Gruissem, K Baerenfaller
Frontiers in plant science 6, 376, 2015
272015
Protein abundance changes and ubiquitylation targets identified after inhibition of the proteasome with syringolin A
J Svozil, M Hirsch-Hoffmann, R Dudler, W Gruissem, K Baerenfaller
Molecular & Cellular Proteomics 13 (6), 1523-1536, 2014
272014
Common and specific protein accumulation patterns in different albino/pale-green mutants reveals regulon organization at the proteome level
R Motohashi, A Rödiger, B Agne, K Baerenfaller, S Baginsky
Plant physiology 160 (4), 2189-2201, 2012
272012
Diurnal changes in the histone H3 signature H3K9ac|H3K27ac|H3S28p are associated with diurnal gene expression in Arabidopsis
K Baerenfaller, H Shu, M Hirsch‐Hoffmann, J Fütterer, L Opitz, ...
Plant, cell & environment 39 (11), 2557-2569, 2016
252016
Integrated proteome and metabolite analysis of the de‐etiolation process in plastids from rice (Oryza sativa L.)
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes‐Nesi, ...
Proteomics 11 (9), 1751-1763, 2011
232011
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Articles 1–20