Nives Skunca
Nives Skunca
Postdoctoral Fellow, ETH Zürich
Verified email at inf.ethz.ch - Homepage
TitleCited byYear
REVIGO summarizes and visualizes long lists of gene ontology terms
F Supek, M Bošnjak, N Škunca, T Šmuc
PloS one 6 (7), e21800, 2011
13442011
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221, 2013
4572013
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ...
Nucleic acids research 43 (D1), D240-D249, 2014
1182014
The what, where, how and why of gene ontology—a primer for bioinformaticians
L du Plessis, N Škunca, C Dessimoz
Briefings in bioinformatics 12 (6), 723-735, 2011
1152011
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 184, 2016
882016
Quality of computationally inferred gene ontology annotations
N Škunca, A Altenhoff, C Dessimoz
PLoS computational biology 8 (5), e1002533, 2012
822012
Translational selection is ubiquitous in prokaryotes
F Supek, N Škunca, J Repar, K Vlahoviček, T Šmuc
PLoS genetics 6 (6), e1001004, 2010
682010
A transcriptomic-phylogenomic analysis of the evolutionary relationships of flatworms
B Egger, F Lapraz, B Tomiczek, S Müller, C Dessimoz, J Girstmair, ...
Current Biology 25 (10), 1347-1353, 2015
562015
Inferring horizontal gene transfer
M Ravenhall, N Škunca, F Lassalle, C Dessimoz
PLoS computational biology 11 (5), e1004095, 2015
522015
The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease
X Peng, J Alföldi, K Gori, AJ Eisfeld, SR Tyler, J Tisoncik-Go, D Brawand, ...
Nature biotechnology 32 (12), 1250, 2014
422014
Tests results strength and thermophysical properties of aerated concrete block wall samples with the use of polyurethane adhesive.
G Grinfeldl, A Gorshkov, N Vatin
Advanced Materials Research 941, 2014
382014
Erlotinib in the first-line treatment of non-small-cell lung cancer
M D’Arcangelo, F Cappuzzo
Expert review of anticancer therapy 13 (5), 523-533, 2013
28*2013
Polyketide synthase genes and the natural products potential of Dictyostelium discoideum
J Zucko, N Skunca, T Curk, B Zupan, PF Long, J Cullum, RH Kessin, ...
Bioinformatics 23 (19), 2543-2549, 2007
272007
Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships
N Škunca, M Bošnjak, A Kriško, P Panov, S Džeroski, T Šmuc, F Supek
PLoS computational biology 9 (1), e1002852, 2013
242013
CAFA and the open world of protein function predictions
C Dessimoz, N Škunca, PD Thomas
Trends in Genetics 29 (11), 609-610, 2013
212013
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations
FB Bastian, MC Chibucos, P Gaudet, M Giglio, GL Holliday, H Huang, ...
Database 2015, bav043, 2015
202015
Primer on the gene ontology
P Gaudet, N Škunca, JC Hu, C Dessimoz
The Gene Ontology Handbook, 25-37, 2017
132017
Phylogenetic profiling: how much input data is enough?
N Škunca, C Dessimoz
PloS one 10 (2), e0114701, 2015
132015
Rating based Lévy LIBOR model
E Eberlein, Z Grbac
Mathematical finance 23 (4), 591-626, 2013
122013
The Gene Ontology Handbook
C Dessimoz, N Škunca
Humana Press, 2017
72017
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Articles 1–20