| A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici T Badet, U Oggenfuss, L Abraham, BA McDonald, D Croll BMC biology 18, 1-18, 2020 | 102 | 2020 |
| Stress-driven transposable element de-repression dynamics and virulence evolution in a fungal pathogen S Fouché, T Badet, U Oggenfuss, C Plissonneau, CS Francisco, D Croll Molecular biology and evolution 37 (1), 221-239, 2020 | 91 | 2020 |
| Genome evolution in fungal plant pathogens: looking beyond the two-speed genome model DE Torres, U Oggenfuss, D Croll, MF Seidl Fungal Biology Reviews 34 (3), 136-143, 2020 | 59 | 2020 |
| A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen U Oggenfuss, T Badet, T Wicker, FE Hartmann, NK Singh, L Abraham, ... Elife 10, e69249, 2021 | 45 | 2021 |
| A devil's bargain with transposable elements in plant pathogens S Fouché, U Oggenfuss, E Chanclud, D Croll Trends in Genetics 38 (3), 222-230, 2022 | 31 | 2022 |
| Complex Evolutionary Origins of Specialized Metabolite Gene Cluster Diversity among the Plant Pathogenic Fungi of the Fusarium graminearum Species Complex SM Tralamazza, LO Rocha, U Oggenfuss, B Corrêa, D Croll Genome biology and evolution 11 (11), 3106-3122, 2019 | 26 | 2019 |
| The population genetics of adaptation through copy number variation in a fungal plant pathogen L Stalder, U Oggenfuss, N Mohd‐Assaad, D Croll Molecular Ecology 32 (10), 2443-2460, 2023 | 16 | 2023 |
| Recent transposable element bursts are associated with the proximity to genes in a fungal plant pathogen U Oggenfuss, D Croll PLoS Pathogens 19 (2), e1011130, 2023 | 16 | 2023 |
| Population genomics of transposable element activation in the highly repressive genome of an agricultural pathogen D Pereira, U Oggenfuss, BA McDonald, D Croll Microbial Genomics 7 (8), 000540, 2021 | 14 | 2021 |
| A population-level invasion by transposable elements in a fungal pathogen U Oggenfuss, T Badet, T Wicker, FE Hartmann, NK Singh, LN Abraham, ... BioRxiv, 2020.02. 11.944652, 2020 | 14 | 2020 |
| Transposable elements in fungi: coevolution with the host genome shapes, genome architecture, plasticity and adaptation C Lorrain, U Oggenfuss, D Croll, S Duplessis, E Stukenbrock Encyclopedia of Mycology, 142-155, 2021 | 6 | 2021 |
| High-quality genome assembly of Pseudocercospora ulei the main threat to natural rubber trees S González-Sayer, U Oggenfuss, I García, F Aristizabal, D Croll, ... Genetics and molecular biology 45, e50510051, 2022 | 5 | 2022 |
| Genome evolution in fungal plant pathogens: looking beyond the two-speed genome model. Fungal Biol Rev 34: 136–143 DE Torres, U Oggenfuss, D Croll, MF Seidl | 5 | 2020 |
| Population-level transposable element expression dynamics influence trait evolution in a fungal crop pathogen LN Abraham, U Oggenfuss, D Croll Mbio, e02840-23, 2024 | 1 | 2024 |
| Recurrent chromosome destabilization through repeat-mediated rearrangements in a fungal pathogen S Fouche, U Oggenfuss, BA McDonald, D Croll bioRxiv, 2023.07. 14.549097, 2023 | 1 | 2023 |
| A systematic screen for co-option of transposable elements across the fungal kingdom U Oggenfuss, T Badet, D Croll Mobile DNA 15 (1), 2, 2024 | | 2024 |
| Genome Evolution in Fungal Plant Pathogens: From Populations to Kingdom-Wide Dynamics U Oggenfuss, A Feurtey, CS Reyes-Avila, E Gluck-Thaler, G Puccetti, ... Evolution of Fungi and Fungal-Like Organisms, 103-121, 2023 | | 2023 |
| The role of transposable elements in the adaptive evolution of fungi U Oggenfuss Neuchâtel, 2022 | | 2022 |
| Interactions within bacterial and fungal communities in agricultural soils with different levels of disease resistance F Dennert, K Schlaeppi, M Fesselet, U Oggenfuss, K Hartman, N Imperiali, ... Pseudomonas spp. producing antimicrobial metabolites in agricultural soils …, 2017 | | 2017 |
