Damian Szklarczyk
Damian Szklarczyk
SIB Swiss Institute of Bioinformatics / University of Zurich
Bestätigte E-Mail-Adresse bei isb-sib.ch
TitelZitiert vonJahr
STRING v10: protein–protein interaction networks, integrated over the tree of life
D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ...
Nucleic acids research 43 (D1), D447-D452, 2014
38412014
STRING v9. 1: protein-protein interaction networks, with increased coverage and integration
A Franceschini, D Szklarczyk, S Frankild, M Kuhn, M Simonovic, A Roth, ...
Nucleic acids research 41 (D1), D808-D815, 2012
28682012
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
D Szklarczyk, A Franceschini, M Kuhn, M Simonovic, A Roth, P Minguez, ...
Nucleic acids research 39 (suppl_1), D561-D568, 2010
27062010
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research, gkw937, 2016
13592016
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ...
Nucleic acids research 44 (D1), D286-D293, 2015
5212015
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
L Orlando, A Ginolhac, G Zhang, D Froese, A Albrechtsen, M Stiller, ...
Nature 499 (7456), 74, 2013
4812013
eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ...
Nucleic acids research 40 (D1), D284-D289, 2011
4032011
eggNOG v4. 0: nested orthology inference across 3686 organisms
S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ...
Nucleic acids research 42 (D1), D231-D239, 2014
3082014
STITCH 4: integration of protein–chemical interactions with user data
M Kuhn, D Szklarczyk, S Pletscher-Frankild, TH Blicher, C Von Mering, ...
Nucleic acids research 42 (D1), D401-D407, 2013
2852013
Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level
JMR Danielsen, KB Sylvestersen, S Bekker-Jensen, D Szklarczyk, ...
Molecular & Cellular Proteomics 10 (3), M110. 003590, 2011
2462011
STITCH 3: zooming in on protein–chemical interactions
M Kuhn, D Szklarczyk, A Franceschini, C Von Mering, LJ Jensen, P Bork
Nucleic acids research 40 (D1), D876-D880, 2011
2442011
eggNOG v2. 0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations
J Muller, D Szklarczyk, P Julien, I Letunic, A Roth, M Kuhn, S Powell, ...
Nucleic acids research 38 (suppl_1), D190-D195, 2009
2232009
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data
D Szklarczyk, A Santos, C von Mering, LJ Jensen, P Bork, M Kuhn
Nucleic acids research 44 (D1), D380-D384, 2015
2062015
STITCH 2: an interaction network database for small molecules and proteins
M Kuhn, D Szklarczyk, A Franceschini, M Campillos, C von Mering, ...
Nucleic acids research 38 (suppl_1), D552-D556, 2009
2042009
Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington
MR Waters, TW Stafford, HG McDonald, C Gustafson, M Rasmussen, ...
Science 334 (6054), 351-353, 2011
1592011
Specific CLK inhibitors from a novel chemotype for regulation of alternative splicing
O Fedorov, K Huber, A Eisenreich, P Filippakopoulos, O King, AN Bullock, ...
Chemistry & biology 18 (1), 67-76, 2011
1382011
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper
J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ...
Molecular biology and evolution 34 (8), 2115-2122, 2017
1332017
Version 4.0 of PaxDb: protein abundance data, integrated across model organisms, tissues, and cell‐lines
M Wang, CJ Herrmann, M Simonovic, D Szklarczyk, C von Mering
Proteomics 15 (18), 3163-3168, 2015
1252015
Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins
E Cappellini, LJ Jensen, D Szklarczyk, A Ginolhac, RAR da Fonseca, ...
Journal of proteome research 11 (2), 917-926, 2011
1222011
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425, 2016
812016
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