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Raf Winand
Raf Winand
Sciensano
Verified email at sciensano.be
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Year
Targeting the 16s rRNA gene for bacterial identification in complex mixed samples: Comparative evaluation of second (illumina) and third (oxford nanopore technologies …
R Winand, B Bogaerts, S Hoffman, L Lefevre, M Delvoye, J Van Braekel, ...
International journal of molecular sciences 21 (1), 298, 2019
1662019
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
B Berbers, A Saltykova, C Garcia-Graells, P Philipp, F Arella, K Marchal, ...
Scientific reports 10 (1), 4310, 2020
712020
dendsort: modular leaf ordering methods for dendrogram representations in R
R Sakai, R Winand, T Verbeiren, AV Moere, J Aerts
F1000Research 3, 2014
582014
Validation of a bioinformatics workflow for routine analysis of whole-genome sequencing data and related challenges for pathogen typing in a European National Reference Center …
B Bogaerts, R Winand, Q Fu, J Van Braekel, W Mattheus, K Vanneste
Frontiers in microbiology 10, 430170, 2019
502019
DNA methylation analysis of Homeobox genes implicates HOXB7 hypomethylation as risk factor for neural tube defects
A Rochtus, B Izzi, E Vangeel, S Louwette, C Wittevrongel, D Lambrechts, ...
Epigenetics 10 (1), 92-101, 2015
412015
In vitro screening of embryos by whole-genome sequencing: now, in the future or never?
R Winand, K Hens, W Dondorp, G de Wert, Y Moreau, JR Vermeesch, ...
Human Reproduction 29 (4), 842-851, 2014
352014
Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO
MA Fraiture, A Saltykova, S Hoffman, R Winand, D Deforce, K Vanneste, ...
Scientific reports 8 (1), 7903, 2018
332018
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively …
B Bogaerts, S Nouws, B Verhaegen, S Denayer, J Van Braekel, R Winand, ...
Microbial Genomics 7 (3), 000531, 2021
272021
Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube …
A Rochtus, R Winand, G Laenen, E Vangeel, B Izzi, C Wittevrongel, ...
Clinical Epigenetics 8, 1-12, 2016
232016
Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case
M Deckers, K Vanneste, R Winand, SCJ De Keersmaecker, S Denayer, ...
Food chemistry 305, 125431, 2020
222020
Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals
R Winand, K Theys, M Eusébio, J Aerts, RJ Camacho, P Gomes, ...
Aids 29 (15), 2045-2052, 2015
212015
Concentrations and distribution of chlorinated paraffins in Belgian foods
TJ McGrath, F Limonier, G Poma, J Bombeke, R Winand, K Vanneste, ...
Environmental Pollution 291, 118236, 2021
202021
A bioinformatics whole-genome sequencing workflow for clinical mycobacterium tuberculosis complex isolate analysis, validated using a reference collection extensively …
B Bogaerts, T Delcourt, K Soetaert, S Boarbi, PJ Ceyssens, R Winand, ...
Journal of Clinical Microbiology 59 (6), 10.1128/jcm. 00202-21, 2021
202021
Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A (H3N2) outbreak season allows improved surveillance
LAE Van Poelvoorde, B Bogaerts, Q Fu, SCJ De Keersmaecker, I Thomas, ...
Microbial Genomics 7 (9), 000643, 2021
132021
Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples
S Van Borm, Q Fu, R Winand, K Vanneste, M Hakhverdyan, D Höper, ...
Journal of Virological Methods 283, 113916, 2020
122020
Screening strategy targeting the presence of food enzyme-producing fungi in food enzyme preparations
M Deckers, K Vanneste, R Winand, M Hendrickx, P Becker, ...
Food Control 117, 107295, 2020
112020
Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing
MA Fraiture, B Bogaerts, R Winand, M Deckers, N Papazova, K Vanneste, ...
Scientific Reports 10 (1), 7094, 2020
112020
Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations
B Bogaerts, R Winand, J Van Braekel, S Hoffman, NHC Roosens, ...
Microbial Genomics 7 (11), 000699, 2021
82021
Next-generation sequencing: a key tool to identify unauthorized genetically modified microorganisms in food enzyme preparations
MA Fraiture, B Bogaerts, R Winand, M Deckers, N Papazova, K Vanneste, ...
Sci. Rep 10, 7094, 2020
72020
Phylogenomic investigation of increasing fluoroquinolone resistance among belgian cases of shigellosis between 2013 and 2018 indicates both travel-related imports and domestic …
B Bogaerts, R Winand, J Van Braekel, W Mattheus, ...
Microorganisms 9 (4), 767, 2021
52021
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