Samuel S Hunter
Samuel S Hunter
Verified email at ucdavis.edu - Homepage
TitleCited byYear
Compensatory mutations improve general permissiveness to antibiotic resistance plasmids
W Loftie-Eaton, K Bashford, H Quinn, K Dong, J Millstein, S Hunter, ...
Nature ecology & evolution 1 (9), 1354-1363, 2017
532017
Evolutionary paths that expand plasmid host-range: implications for spread of antibiotic resistance
W Loftie-Eaton, H Yano, S Burleigh, RS Simmons, JM Hughes, ...
Molecular biology and evolution 33 (4), 885-897, 2016
532016
The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards
S Laurent, SP Pfeifer, ML Settles, SS Hunter, KM Hardwick, L Ormond, ...
Molecular ecology 25 (1), 306-323, 2016
412016
Retinal regeneration is facilitated by the presence of surviving neurons
T Sherpa, T Lankford, TE McGinn, SS Hunter, RA Frey, C Sun, M Ryan, ...
Developmental neurobiology 74 (9), 851-876, 2014
352014
Retinoic acid signaling regulates differential expression of the tandemly-duplicated long wavelength-sensitive cone opsin genes in zebrafish
DM Mitchell, CB Stevens, RA Frey, SS Hunter, R Ashino, S Kawamura, ...
PLoS genetics 11 (8), 2015
332015
Comparative genome analysis of an avirulent and two virulent strains of avian Pasteurella multocida reveals candidate genes involved in fitness and pathogenicity
TJ Johnson, JE Abrahante, SS Hunter, M Hauglund, FM Tatum, ...
BMC microbiology 13 (1), 106, 2013
272013
Identification of novel genes associated with molecular sex differentiation in the embryonic gonads of rainbow trout (Oncorhynchus mykiss)
T Cavileer, S Hunter, T Okutsu, G Yoshizaki, JJ Nagler
Sexual Development 3 (4), 214-224, 2009
272009
Super deduper, fast PCR duplicate detection in fastq files
KR Petersen, DA Streett, AT Gerritsen, SS Hunter, ML Settles
Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015
202015
Assembly by Reduced Complexity (ARC): a hybrid approach for targeted assembly of homologous sequences
SS Hunter, RT Lyon, BAJ Sarver, K Hardwick, LJ Forney, ML Settles
Biorxiv, 014662, 2015
192015
A Sex-Determining Gene (sdY) Assay Shows Discordance between Phenotypic and Genotypic Sex in Wild Populations of Chinook Salmon
TD Cavileer, SS Hunter, J Olsen, J Wenburg, JJ Nagler
Transactions of the American Fisheries Society 144 (2), 423-430, 2015
172015
SeqyClean: a pipeline for high-throughput sequence data preprocessing
IY Zhbannikov, SS Hunter, JA Foster, ML Settles
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
142017
Retinal proliferation response in the buphthalmic zebrafish, bugeye
T Sherpa, SS Hunter, RA Frey, BD Robison, DL Stenkamp
Experimental eye research 93 (4), 424-436, 2011
132011
SEQYCLEAN user manual
IY Zhbannikov, SS Hunter, ML Settles
New York, NY: Elsevier, 2013
102013
Phase variation in Myxococcus xanthus yields cells specialized for iron sequestration
K Dziewanowska, M Settles, S Hunter, I Linquist, F Schilkey, PL Hartzell
PloS one 9 (4), 2014
92014
Non‐sex specific genes associated with the secondary mitotic period of primordial germ cell proliferation in the gonads of embryonic rainbow trout (Oncorhynchus mykiss)
JJ Nagler, T Cavileer, S Hunter, R Drew, T Okutsu, T Sakamoto, ...
Molecular reproduction and development 78 (3), 181-187, 2011
82011
Comparative Phylogenomic Assessment of Mitochondrial Introgression among Several Species of Chipmunks (Tamias)
BAJ Sarver, JR Demboski, JM Good, N Forshee, SS Hunter, J Sullivan
Genome biology and evolution 9 (1), 7-19, 2017
72017
expHTS: analysis of high throughput sequence data in an experimental framework
DA Streett, KR Petersen, AT Gerritsen, SS Hunter, ML Settles
Proceedings of the 6th ACM Conference on Bioinformatics, Computational …, 2015
72015
Silencing efficiency of dsRNA fragments targeting Fusarium graminearum TRI6 and patterns of small interfering RNA associated with reduced virulence and mycotoxin production
T Baldwin, E Islamovic, K Klos, P Schwartz, J Gillespie, S Hunter, ...
PloS one 13 (8), 2018
62018
Draft genome sequence of Pseudomonas moraviensis R28-S
SS Hunter, H Yano, W Loftie-Eaton, J Hughes, L De Gelder, P Stragier, ...
Genome Announc. 2 (1), e00035-14, 2014
62014
Assembly by Reduced Complexity (ARC): a hybrid approach for targeted assembly of homologous sequences. bioRxiv
SS Hunter, RT Lyon, BAJ Sarver, K Hardwick, LJ Forney, ML Settles
52015
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Articles 1–20