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James Lewis
James Lewis
Verified email at clemson.edu - Homepage
Title
Cited by
Cited by
Year
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
Nature 487 (7405), 94-98, 2012
11932012
The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity
R Cai, J Lewis, S Yan, H Liu, CR Clarke, F Campanile, NF Almeida, ...
PLoS pathogens 7 (8), e1002130, 2011
2632011
Complex modular architecture around a simple toolkit of wing pattern genes
SM Van Belleghem, P Rastas, A Papanicolaou, SH Martin, CF Arias, ...
Nature ecology & evolution 1 (3), 0052, 2017
2012017
Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry
JJ Lewis, RC Geltman, PC Pollak, KE Rondem, SM Van Belleghem, ...
Proceedings of the National Academy of Sciences 116 (48), 24174-24183, 2019
1102019
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock
J Ray, PR Munn, A Vihervaara, JJ Lewis, A Ozer, CG Danko, JT Lis
Proceedings of the National Academy of Sciences 116 (39), 19431-19439, 2019
942019
Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies
MA Supple, HM Hines, KK Dasmahapatra, JJ Lewis, DM Nielsen, ...
Genome research 23 (8), 1248-1257, 2013
882013
Dichotomy of dosage compensation along the neo Z chromosome of the monarch butterfly
L Gu, PF Reilly, JJ Lewis, RD Reed, P Andolfatto, JR Walters
Current Biology 29 (23), 4071-4077. e3, 2019
632019
Chromosome Fusion Affects Genetic Diversity and Evolutionary Turnover of Functional Loci but Consistently Depends on Chromosome Size
F Cicconardi, JJ Lewis, SH Martin, RD Reed, CG Danko, SH Montgomery
Molecular biology and evolution 38 (10), 4449-4462, 2021
502021
Genome-Wide Regulatory Adaptation Shapes Population-Level Genomic Landscapes in Heliconius
JJ Lewis, RD Reed
Molecular biology and evolution 36 (1), 159-173, 2019
472019
Cortex cis-regulatory switches establish scale colour identity and pattern diversity in Heliconius
L Livraghi, JJ Hanly, SM Van Bellghem, G Montejo-Kovacevich, ...
eLife 10, e68549, 2021
452021
Genomic architecture of a genetically assimilated seasonal color pattern
KRL van der Burg, JJ Lewis, BJ Brack, RA Fandino, A Mazo-Vargas, ...
Science 370 (6517), 721-725, 2020
452020
ChIP-Seq-annotated Heliconius erato genome highlights patterns of cis-regulatory evolution in Lepidoptera
JJ Lewis, KRL van der Burg, A Mazo-Vargas, RD Reed
Cell reports 16 (11), 2855-2863, 2016
452016
Contrasting Roles of Transcription Factors Spineless and EcR in the Highly Dynamic Chromatin Landscape of Butterfly Wing Metamorphosis
KRL van der Burg, JJ Lewis, A Martin, HF Nijhout, CG Danko, RD Reed
Cell Reports 27 (4), 1027-1038. e3, 2019
332019
RNA polymerase II dynamics shape enhancer–promoter interactions
G Barshad, JJ Lewis, AG Chivu, A Abuhashem, N Krietenstein, EJ Rice, ...
Nature Genetics, 1-11, 2023
29*2023
Deep cis-regulatory homology of the butterfly wing pattern ground plan
A Mazo-Vargas, AM Langmüller, A Wilder, KRL van der Burg, JJ Lewis, ...
Science 378 (6617), 304-308, 2022
212022
The Dryas iulia Genome Supports Multiple Gains of a W Chromosome from a B Chromosome in Butterflies
JJ Lewis, F Cicconardi, SH Martin, RD Reed, CG Danko, SH Montgomery
Genome Biology and Evolution 13 (7), evab128, 2021
212021
Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone
JJ Lewis, SM Van Belleghem, R Papa, CG Danko, RD Reed
Science Advances 6 (39), eabb8617, 2020
212020
A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility
AA Ruggieri, L Livraghi, JJ Lewis, E Evans, F Cicconardi, L Hebberecht, ...
Genome Research 32 (10), 1862-1875, 2022
142022
Heliconius butterflies: a window into the evolution and development of diversity
SM Van Belleghem, JJ Lewis, ES Rivera, R Papa
Current Opinion in Genetics & Development 69, 72-81, 2021
142021
High level of novelty under the hood of convergent evolution
SM Van Belleghem, AA Ruggieri, C Concha, L Livraghi, L Hebberecht, ...
Science 379 (6636), 1043-1049, 2023
132023
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