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Marinka Zitnik
Marinka Zitnik
Assistant Professor, Harvard University
Verified email at hms.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
23132013
Open graph benchmark: Datasets for machine learning on graphs
W Hu, M Fey, M Zitnik, Y Dong, H Ren, B Liu, M Catasta, J Leskovec
Advances in neural information processing systems 33, 22118-22133, 2020
20832020
Gnnexplainer: Generating explanations for graph neural networks
Z Ying, D Bourgeois, J You, M Zitnik, J Leskovec
Advances in neural information processing systems 32, 2019
1959*2019
Strategies for pre-training graph neural networks
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec
arXiv preprint arXiv:1905.12265, 2019
11282019
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
11172018
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
5972017
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
4592019
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge…, 2018
4272018
Network medicine framework for identifying drug-repurposing opportunities for COVID-19
D Morselli Gysi, Do Valle, M Zitnik, A Ameli, X Gan, O Varol, ...
Proceedings of the National Academy of Sciences 118 (19), e2025581118, 2021
4142021
Network Enhancement as a general method to denoise weighted biological networks
B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ...
Nature Communications 9, 3108, 2018
3832018
Interpretability of machine learning‐based prediction models in healthcare
G Stiglic, P Kocbek, N Fijacko, M Zitnik, K Verbert, L Cilar
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 10 (5…, 2020
3052020
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
3002018
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2019
2862019
DeepPurpose: a Deep Learning Library for Drug-Target Interaction Prediction and Applications to Repurposing and Screening
K Huang, T Fu, L Glass, M Zitnik, C Xiao, J Sun
arXiv preprint arXiv:2004.08919, 2020
276*2020
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
2632017
Data Fusion by Matrix Factorization
M Zitnik, B Zupan
Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015
237*2015
Gnnguard: Defending graph neural networks against adversarial attacks
X Zhang, M Zitnik
Advances in neural information processing systems 33, 9263-9275, 2020
2222020
Scientific discovery in the age of artificial intelligence
H Wang, T Fu, Y Du, W Gao, K Huang, Z Liu, P Chandak, S Liu, ...
Nature 620 (7972), 47-60, 2023
211*2023
Genome-wide localization study of yeast Pex11 identifies peroxisome–mitochondria interactions through the ERMES complex
MM Ušaj, M Brložnik, P Kaferle, M Žitnik, H Wolinski, F Leitner, ...
Journal of Molecular Biology 427 (11), 2072-2087, 2015
1592015
Towards a unified framework for fair and stable graph representation learning
C Agarwal, H Lakkaraju, M Zitnik
Uncertainty in Artificial Intelligence, 2114-2124, 2021
1562021
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