Jūlija Pečerska

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Tanja StadlerETH ZurichVerified email at env.ethz.ch
Denise KühnertRobert Koch Institut & Max Planck Institute of GeoanthropologyVerified email at shh.mpg.de
Conor J MeehanDepartment of Biosciences, Nottingham Trent UniversityVerified email at ntu.ac.uk
Bouke de JongHead Mycobacteriology Unit, Institute of Tropical MedicineVerified email at itg.be
Pieter MorisInstitute of Tropical Medicine AntwerpVerified email at itg.be
Stefan NiemannResearch Center BorstelVerified email at fz-borstel.de
Timothy G VaughanDepartment of Biosystems Science and Engineering, ETH Zürich, SwitzerlandVerified email at bsse.ethz.ch
Carsten MagnusF. Hoffmann-La RocheVerified email at roche.com
Joëlle Barido-SottaniIBENS, ENS PSLVerified email at bio.ens.psl.eu
Maria AnisimovaHead of Applied Computational Genomics, ZHAWVerified email at zhaw.ch
Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerified email at cs.auckland.ac.nz
Chi ZhangInstitute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of SciencesVerified email at ivpp.ac.cn
Tracy A. HeathAssociate Professor, Iowa State UniversityVerified email at iastate.edu
David A RasmussenNorth Carolina State UniversityVerified email at ncsu.edu
Oliver PybusUniversity of Oxford / Royal Veterinary CollegeVerified email at zoo.ox.ac.uk
Louis du PlessisUniversity of OxfordVerified email at zoo.ox.ac.uk
Nicola Felix MüllerUniviersity of California San FranciscoVerified email at ucsf.edu
Venelin MitovModeling and simulation scientist, IntiQuan GmbHVerified email at intiquan.com
Veronika BoškováCenter for Integrative Bioinformatics ViennaVerified email at univie.ac.at
Roger D. KouyosUniversity of Zurich; University Hospital ZurichVerified email at uzh.ch

Jūlija Pečerska

Postdoc, ZHAW

Verified email at zhaw.ch - Homepage

Computational Biology Epidemiology Tuberculosis


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The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter, M Merker, C Utpatel, ... EBioMedicine 37, 410-416, 2018	122	2018
Taming the BEAST—A community teaching material resource for BEAST 2 J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ... Systematic biology 67 (1), 170-174, 2018	106	2018
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics D Kühnert, R Kouyos, G Shirreff, J Pečerska, AU Scherrer, J Böni, S Yerly, ... PLoS pathogens 14 (2), e1006895, 2018	67	2018
Quantifying transmission fitness costs of multi-drug resistant tuberculosis J Pečerska, D Kühnert, CJ Meehan, M Coscollá, BC De Jong, S Gagneux, ... Epidemics 36, 100471, 2021	16	2021
TRAL: tandem repeat annotation library E Schaper, A Korsunsky, J Pečerska, A Messina, R Murri, H Stockinger, ... Bioinformatics 31 (18), 3051-3053, 2015	16	2015
The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine 37: 410–416 CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter, M Merker, C Utpatel, ...	9	2018
Transmission of hepatitis b and d viruses in an African rural community CA Pinho-Nascimento, MW Bratschi, R Höfer, CC Soares, L Warryn, ... Msystems 3 (5), 10.1128/msystems. 00120-18, 2018	7	2018
ARPIP: Ancestral sequence Reconstruction with insertions and deletions under the Poisson Indel Process G Jowkar, J Pečerska, M Maiolo, M Gil, M Anisimova Systematic biology 72 (2), 307-318, 2023	3	2023
Joint alignment and tree inference J Pečerska, M Gil, M Anisimova bioRxiv, 2021.09. 28.462230, 2021	1	2021
Mathematical Models for the Epidemiology and Evolution of Mycobacterium tuberculosis J Pečerska, J Wood, MM Tanaka, T Stadler Strain Variation in the Mycobacterium tuberculosis Complex: Its Role in …, 2017	1	2017
Please Mind the Gap: Indel-Aware Parsimony for Fast and Accurate Ancestral Sequence Reconstruction and Multiple Sequence Alignment including Long Indels C Iglhaut, J Pečerska, M Gil, M Anisimova bioRxiv, 2024.03. 27.586611, 2024		2024
Decoding Genomes: From Sequences to Phylodynamics T Stadler, C Magnus, T Vaughan, J Barido-Sottani, V Bošková, J Huisman, ...		2024
Resistance is futile: taming the beasts of antibiotic resistance in Mycobacterium tuberculosis J Pečerska ETH Zurich, 2019		2019
ETH Library CJ Meehan, P Moris, TA Kohl, J Pečerska, S Akter, M Merker, C Utpatel, ...		2018
Large-scale Prediction and Functional Analysis of Tandem Repeats in Proteomes of Diverse Organisms J Pečerska Center of Economic Research at ETH Zurich, 2015		2015

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