Carsten O. Daub
Carsten O. Daub
Associate Professor, Karolinska Institutet
Verified email at - Homepage
Cited by
Cited by
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
An atlas of human long non-coding RNAs with accurate 5′ ends
CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ...
Nature 543 (7644), 199-204, 2017
The mutual information: detecting and evaluating dependencies between variables
R Steuer, J Kurths, CO Daub, J Weise, J Selbig
Bioinformatics 18 (suppl_2), S231-S240, 2002
The regulated retrotransposon transcriptome of mammalian cells
GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ...
Nature genetics 41 (5), 563-571, 2009
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome biology 16, 1-14, 2015
An atlas of combinatorial transcriptional regulation in mouse and man
T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ...
Cell 140 (5), 744-752, 2010
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabl°s, ...
Science 347 (6225), 1010-1014, 2015
An integrated expression atlas of miRNAs and their promoters in human and mouse
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G ┼str÷m, ...
Nature biotechnology 35 (9), 872-878, 2017
Tiny RNAs associated with transcription start sites in animals
RJ Taft, EA Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, ...
Nature genetics 41 (5), 572-578, 2009
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Nature genetics 41 (5), 553-562, 2009
A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness
AM Burroughs, Y Ando, MJL de Hoon, Y Tomaru, T Nishibu, R Ukekawa, ...
Genome research 20 (10), 1398-1410, 2010
Estimating mutual information using B-spline functions–an improved similarity measure for analysing gene expression data
CO Daub, R Steuer, J Selbig, S Kloska
BMC bioinformatics 5, 1-12, 2004
Hidden layers of human small RNAs
H Kawaji, M Nakamura, Y Takahashi, A Sandelin, S Katayama, S Fukuda, ...
BMC genomics 9, 1-21, 2008
Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin
AM Burroughs, Y Ando, ML de Hoon, Y Tomaru, H Suzuki, Y Hayashizaki, ...
RNA biology 8 (1), 158-177, 2011
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages
K Schroder, KM Irvine, MS Taylor, NJ Bokil, KA Le Cao, KA Masterman, ...
Proceedings of the National Academy of Sciences 109 (16), E944-E953, 2012
Adipose tissue microRNAs as regulators of CCL2 production in human obesity
E Arner, N Mejhert, A KulytÚ, PJ Balwierz, M Pachkov, M Cormont, ...
Diabetes 61 (8), 1986-1993, 2012
A predictive computational framework for direct reprogramming between human cell types
OJL Rackham, J Firas, H Fang, ME Oates, ML Holmes, AS Knaupp, ...
Nature genetics 48 (3), 331-335, 2016
MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines
Y Takahashi, ARR Forrest, E Maeno, T Hashimoto, CO Daub, J Yasuda
PloS one 4 (8), e6677, 2009
TagDust—a program to eliminate artifacts from next generation sequencing data
T Lassmann, Y Hayashizaki, CO Daub
Bioinformatics 25 (21), 2839-2840, 2009
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Articles 1–20