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Lukas Heumos
Lukas Heumos
PhD Student Helmholtz Munich in Fabian Theis' group and Research Software Engineer at LaminLabs
Verified email at helmholtz-muenchen.de - Homepage
Title
Cited by
Cited by
Year
Best practices for single-cell analysis across modalities
L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ...
Nature Reviews Genetics 24 (8), 550-572, 2023
1982023
An integrated cell atlas of the lung in health and disease
L Sikkema, C Ramírez-Suástegui, DC Strobl, TE Gillett, L Zappia, ...
Nature Medicine 29 (6), 1563-1577, 2023
186*2023
The scverse project provides a computational ecosystem for single-cell omics data analysis
I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ...
Nature biotechnology 41 (5), 604-606, 2023
532023
Comparative targeting analysis of KLF1, BCL11A, and HBG1/2 in CD34+ HSPCs by CRISPR/Cas9 for the induction of fetal hemoglobin
A Lamsfus-Calle, A Daniel-Moreno, JS Antony, T Epting, L Heumos, ...
Scientific reports 10 (1), 10133, 2020
512020
The AIMe registry for artificial intelligence in biomedical research
J Matschinske, N Alcaraz, A Benis, M Golebiewski, DG Grimm, L Heumos, ...
Nature methods 18 (10), 1128-1131, 2021
442021
MHCquant: Automated and reproducible data analysis for immunopeptidomics
L Bichmann, A Nelde, M Ghosh, L Heumos, C Mohr, A Peltzer, ...
Journal of proteome research 18 (11), 3876-3884, 2019
392019
Sfaira accelerates data and model reuse in single cell genomics
DS Fischer, L Dony, M König, A Moeed, L Zappia, L Heumos, S Tritschler, ...
Genome biology 22 (1), 1-21, 2021
262021
A mutation-agnostic hematopoietic stem cell gene therapy for metachromatic leukodystrophy
JS Antony, A Daniel-Moreno, A Lamsfus-Calle, J Raju, M Kaftancioglu, ...
The CRISPR Journal 5 (1), 66-79, 2022
112022
Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis
NJ Lang, J Gote-Schniering, D Porras-Gonzalez, L Yang, LJ De Sadeleer, ...
Science translational medicine 15 (725), eadh0908, 2023
82023
Probe set selection for targeted spatial transcriptomics
LB Kuemmerle, MD Luecken, AB Firsova, LB de Andrade e Sousa, ...
bioRxiv, 2022.08. 16.504115, 2022
52022
Universal gene correction approaches for β-hemoglobinopathies using CRISPR-Cas9 and adeno-associated virus serotype 6 donor templates
A Lamsfus-Calle, A Daniel-Moreno, G Ureña-Bailén, J Rottenberger, ...
The CRISPR Journal 4 (2), 207-222, 2021
42021
A spatially resolved extracellular matrix proteome atlas of the distal human lung
Y Chen, J Gote-Schniering, M Müller, P Albanese, A Jankevics, ...
European Respiratory Journal 62 (suppl 67), 2023
12023
hadge: a comprehensive pipeline for donor deconvolution in single cell
F Curion, X Wu, L Heumos, M Gonzales, L Halle, M Grant-Peters, ...
bioRxiv, 2023.07. 23.550061, 2023
12023
mlf-core: a framework for deterministic machine learning
L Heumos, P Ehmele, L Kuhn Cuellar, K Menden, E Miller, S Lemke, ...
Bioinformatics 39 (4), btad164, 2023
12023
Ex vivo modeling of human lung fibrogenesis and drug mode of action screens using single cell RNA-seq in precision-cut lung slices
NJ Lang, M Ansari, L Yang, S Zhou, D Porras-Gonzalez, A Agami, ...
European Respiratory Journal 60 (suppl 66), 2022
12022
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data
J Pfeuffer, C Bielow, S Wein, K Jeong, E Netz, A Walter, O Alka, L Nilse, ...
Nature Methods, 1-3, 2024
2024
Exploratory electronic health record analysis with ehrapy
L Heumos, P Ehmele, T Treis, J Upmeier zu Belzen, A Namsaraeva, ...
medRxiv, 2023.12. 11.23299816, 2023
2023
Myeloid-dependent immunosuppressive features drive IPF progression
T Kapellos, V Viteri, D Sirokha, F Greiffo, A Namsaraeva, L Heumos, ...
European Respiratory Journal 62 (suppl 67), 2023
2023
Myeloid-Dependent Immunosuppressive Features Drive IPF Progression
IE Fernandez, T Kapellos, V Viteri, D Sirokha, F Greiffo, L Heumos, ...
B65. IMMUNE AND ENDOTHELIAL CELLS HIT BACK AT LUNG REPAIR, A3960-A3960, 2023
2023
Single cell transcriptomic dissection of virus induced immunopathology in interferon gamma receptor null mice
L Yang, L Heumos, I Angelidis, M Ansari, S Zhou, CH Mayer, LM Simon, ...
European Respiratory Journal 60 (suppl 66), 2022
2022
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