| Block copolymer micellization as a protection strategy for DNA origami NP Agarwal, M Matthies, FN Gür, K Osada, TL Schmidt Angewandte Chemie International Edition 56 (20), 5460-5464, 2017 | 195 | 2017 |
| Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation E Poppleton, J Bohlin, M Matthies, S Sharma, F Zhang, P Šulc Nucleic acids research 48 (12), e72-e72, 2020 | 110 | 2020 |
| Design and synthesis of triangulated DNA origami trusses M Matthies, NP Agarwal, TL Schmidt Nano letters 16 (3), 2108-2113, 2016 | 72 | 2016 |
| TacoxDNA: A user‐friendly web server for simulations of complex DNA structures, from single strands to origami LR Antonio Suma, Erik Poppleton, Michael Matthies, Petr Šulc, Flavio Romano ... Journal of Computational Chemistry, 2019 | 70 | 2019 |
| Design and simulation of DNA, RNA and hybrid protein–nucleic acid nanostructures with oxView J Bohlin, M Matthies, E Poppleton, J Procyk, A Mallya, H Yan, P Šulc Nature protocols 17 (8), 1762-1788, 2022 | 46 | 2022 |
| Switchable reconfiguration of a seven-ring interlocked DNA catenane nanostructure CH Lu, A Cecconello, XJ Qi, N Wu, SS Jester, M Famulok, M Matthies, ... Nano Letters 15 (10), 7133-7137, 2015 | 46 | 2015 |
| DNA-encircled lipid bilayers K Iric, M Subramanian, J Oertel, NP Agarwal, M Matthies, X Periole, ... Nanoscale 10 (39), 18463-18467, 2018 | 42 | 2018 |
| Structural Transformation of Wireframe DNA Origami via DNA Polymerase Assisted Gap-Filling NP Agarwal, M Matthies, B Joffroy, TL Schmidt ACS nano 12 (3), 2546-2553, 2018 | 41 | 2018 |
| Triangulated wireframe structures assembled using single-stranded DNA tiles M Matthies, NP Agarwal, E Poppleton, FM Joshi, P Sulc, TL Schmidt Acs Nano 13 (2), 1839-1848, 2019 | 27 | 2019 |
| The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly CR Simmons, T MacCulloch, M Krepl, M Matthies, A Buchberger, ... Nature communications 13 (1), 3112, 2022 | 26 | 2022 |
| The oxDNA coarse-grained model as a tool to simulate DNA origami JPK Doye, H Fowler, D Prešern, J Bohlin, L Rovigatti, F Romano, P Šulc, ... DNA and RNA Origami: Methods and Protocols, 93-112, 2023 | 20 | 2023 |
| oxDNA: coarse-grained simulations of nucleic acids made simple E Poppleton, M Matthies, D Mandal, F Romano, P Šulc, L Rovigatti Journal of Open Source Software 8 (81), 4693, 2023 | 15 | 2023 |
| A simple solution to the problem of self-assembling cubic diamond crystals L Rovigatti, J Russo, F Romano, M Matthies, L Kroc, P Šulc Nanoscale 14 (38), 14268-14275, 2022 | 15 | 2022 |
| A self-regulating DNA rotaxane linear actuator driven by chemical energy Z Yu, M Centola, J Valero, M Matthies, P Sulc, M Famulok Journal of the American Chemical Society 143 (33), 13292-13298, 2021 | 12 | 2021 |
| Hairygami: Analysis of DNA Nanostructures' Conformational Change Driven by Functionalizable Overhangs M Sample, H Liu, M Matthies, P Šulc arXiv preprint arXiv:2302.09109, 2023 | 5 | 2023 |
| Inverse design of a pyrochlore lattice of DNA origami through model-driven experiments H Liu, M Matthies, J Russo, L Rovigatti, RP Narayanan, T Diep, D McKeen, ... arXiv preprint arXiv:2310.10995, 2023 | 2 | 2023 |
| Single-Molecule Force Spectroscopy of Toehold-Mediated Strand Displacement A Walbrun, T Wang, M Matthies, P Šulc, FC Simmel, M Rief bioRxiv, 2024.01. 16.575816, 2024 | | 2024 |
| Coarse-Grained Simulations Of Dna And Rna Systems With Oxdna And Oxrna Models: Tutorial ML Sample, M Matthies, P Šulc 2023 Winter Simulation Conference (WSC), 91-105, 2023 | | 2023 |
| Coarse-grained simulations of DNA and RNA systems with oxDNA and oxRNA models: Introductory tutorial M Matthies, M Sample, P Šulc arXiv preprint arXiv:2308.01455, 2023 | | 2023 |
| High-speed 3D DNA-PAINT and unsupervised clustering for unlocking 3D DNA origami cryptography GBM Wisna, D Sukhareva, J Zhao, D Satyabola, M Matthies, S Roy, ... bioRxiv, 2023.08. 29.555281, 2023 | | 2023 |
Petr ŠulcArizona State UniversityVerified email at asu.edu
