Alex Marand
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Widespread long-range cis-regulatory elements in the maize genome
WA Ricci, Z Lu, L Ji, AP Marand, CL Ethridge, NG Murphy, JM Noshay, ...
Nature plants 5 (12), 1237-1249, 2019
The prevalence, evolution and chromatin signatures of plant regulatory elements
Z Lu, AP Marand, WA Ricci, CL Ethridge, X Zhang, RJ Schmitz
Nature Plants 5 (12), 1250-1259, 2019
Genome sequence of M6, a diploid inbred clone of the high‐glycoalkaloid‐producing tuber‐bearing potato species Solanum chacoense, reveals residual …
CP Leisner, JP Hamilton, E Crisovan, NC Manrique‐Carpintero, ...
The Plant Journal 94 (3), 562-570, 2018
PlantDHS: a database for DNase I hypersensitive sites in plants
T Zhang, AP Marand, J Jiang
Nucleic Acids Research 44 (D1), D1148-D1153, 2016
Proliferation of regulatory DNA elements derived from transposable elements in the maize genome
H Zhao, W Zhang, L Chen, L Wang, AP Marand, Y Wu, J Jiang
Plant Physiology 176 (4), 2789-2803, 2018
Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato
AP Marand, SH Jansky, H Zhao, CP Leisner, X Zhu, Z Zeng, E Crisovan, ...
Genome biology 18 (1), 1-16, 2017
Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato
Z Zeng, W Zhang, AP Marand, B Zhu, CR Buell, J Jiang
Genome biology 20 (1), 1-17, 2019
Towards genome-wide prediction and characterization of enhancers in plants
AP Marand, T Zhang, B Zhu, J Jiang
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (1), 131-139, 2017
A cis-regulatory atlas in maize at single-cell resolution
AP Marand, Z Chen, A Gallavotti, RJ Schmitz
Cell 184 (11), 3041-3055. e21, 2021
Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes
PA Crisp, AP Marand, JM Noshay, P Zhou, Z Lu, RJ Schmitz, NM Springer
Proceedings of the National Academy of Sciences 117 (38), 23991-24000, 2020
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ...
Science 373 (6555), 655-662, 2021
Historical meiotic crossover hotspots fueled patterns of evolutionary divergence in rice
AP Marand, H Zhao, W Zhang, Z Zeng, C Fang, J Jiang
The Plant Cell 31 (3), 645-662, 2019
Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes
R Kieft, Y Zhang, AP Marand, JD Moran, R Bridger, L Wells, RJ Schmitz, ...
PLoS genetics 16 (2), e1008390, 2020
Chromatin accessibility profiling methods
LM Minnoye, GK Marinov, T Krausgruber, L Pan, AP Marand, S Secchia, ...
Nature Reviews Methods Primers 1 (1), 2021
Residual heterozygosity and epistatic interactions underlie the complex genetic architecture of yield in diploid potato
AP Marand, SH Jansky, JL Gage, AJ Hamernik, N de Leon, J Jiang
Genetics 212 (1), 317-332, 2019
Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons
JM Noshay, AP Marand, SN Anderson, P Zhou, MK Mejia Guerra, Z Lu, ...
Genetics 217 (1), 1-13, 2021
The prevalence, evolution and chromatin signatures of plant regulatory elements. Nat. Plants 5: 1250–1259
Z Lu, AP Marand, WA Ricci, CL Ethridge, X Zhang, RJ Schmitz
Single-cell analysis of cis-regulatory elements
AP Marand, RJ Schmitz
Current Opinion in Plant Biology 65, 102094, 2022
Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes
JM Noshay, Z Liang, P Zhou, PA Crisp, AP Marand, CN Hirsch, ...
G3 Genes| Genomes| Genetics, 2021
Quality control and evaluation of plant epigenomics data
RJ Schmitz, AP Marand, X Zhang, RA Mosher, F Turck, X Chen, MJ Axtell, ...
The Plant Cell, 2021
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