| Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011 | 333 | 2011 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 203 | 2020 |
| The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks R Machné, A Finney, S Müller, J Lu, S Widder, C Flamm Bioinformatics 22 (11), 1406-1407, 2006 | 140 | 2006 |
| The future of origin of life research: bridging decades-old divisions M Preiner, S Asche, S Becker, HC Betts, A Boniface, E Camprubi, ... Life 10 (3), 20, 2020 | 103 | 2020 |
| Evolutionary footprints of nucleosome positions in yeast S Washietl, R Machné, N Goldman Trends in genetics 24 (12), 583-587, 2008 | 82 | 2008 |
| The yin and yang of yeast transcription: elements of a global feedback system between metabolism and chromatin R Machné, DB Murray PloS one 7 (6), e37906, 2012 | 65 | 2012 |
| The yin and yang of yeast transcription: elements of a global feedback system between metabolism and chromatin R Machné, DB Murray PloS one 7 (6), e37906, 2012 | 65 | 2012 |
| Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth R Steuer, H Knoop, R Machné Journal of experimental botany 63 (6), 2259-2274, 2012 | 63 | 2012 |
| How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis R Lehmann, R Machné, J Georg, M Benary, IM Axmann, R Steuer BMC bioinformatics 14, 1-16, 2013 | 30 | 2013 |
| Similarity-based segmentation of multi-dimensional signals R Machné, DB Murray, PF Stadler Scientific Reports 7 (1), 12355, 2017 | 22 | 2017 |
| The dynamics of cellular energetics during continuous yeast culture C Amariei, R Machne, K Sasidharan, W Gottstein, M Tomita, T Soga, ... 2013 35th Annual International Conference of the IEEE Engineering in …, 2013 | 21 | 2013 |
| Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data G Doose, M Alexis, R Kirsch, S Findeiß, D Langenberger, R Machné, ... RNA biology 10 (7), 1204-1210, 2013 | 20 | 2013 |
| Inverse Bifurcation Analysis of a Model for the Mammalian G1/S Regulatory Module J Lu, HW Engl, R Machné, P Schuster International Conference on Bioinformatics Research and Development, 168-184, 2007 | 17 | 2007 |
| The structural code of cyanobacterial genomes R Lehmann, R Machné, H Herzel Nucleic acids research 42 (14), 8873-8883, 2014 | 14 | 2014 |
| Temporal partitioning of the yeast cellular network DB Murray, C Amariei, K Sasidharan, R Machné, MA Aon, D Lloyd Systems biology of metabolic and signaling networks: energy, mass and …, 2014 | 14 | 2014 |
| Time resolved DNA occupancy dynamics during the respiratory oscillation uncover a global reset point in the yeast growth program C Amariei, R Machné, V Stolc, T Soga, M Tomita, DB Murray Microbial Cell 1 (9), 279, 2014 | 13 | 2014 |
| SBML Ode Solver library: Extensions for inverse analysis J Lu, S Muller, R Machné, C Flamm Proceedings of the Fifth International Workshop on Computational Systems …, 2008 | 12 | 2008 |
| A new dynamic model for highly efficient mass transfer in aerated bioreactors and consequences for kLa identification S Müller, DB Murray, R Machne Biotechnology and Bioengineering 109 (12), 2997-3006, 2012 | 9 | 2012 |
| A new dynamic model for highly efficient mass transfer in aerated bioreactors and consequences for kLa identification S Müller, DB Murray, R Machne Biotechnology and Bioengineering 109 (12), 2997-3006, 2012 | 9 | 2012 |
| Mitochondrial genome evolution M Bernt, R Machné, AH Sahyoun, M Middendorf, PF Stadler eLS, 2013 | 7 | 2013 |
Douglas MurrayVerified email at ttck.keio.ac.jp
