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Ximena Bonilla
Ximena Bonilla
SOPHiA GENETICS, Tertiary Analysis
Verified email at sophiagenetics.com
Title
Cited by
Cited by
Year
Genomic analysis identifies new drivers and progression pathways in skin basal cell carcinoma
X Bonilla, L Parmentier, B King, F Bezrukov, G Kaya, V Zoete, ...
Nature genetics 47 (3), 398, 2016
5092016
Somatic Activating KRAS Mutations in Arteriovenous Malformations of the Brain
SI Nikolaev, S Vetiska, X Bonilla, E Boudreau, S Jauhiainen, ...
New England Journal of Medicine 378 (3), 250-261, 2018
4452018
Domains of genome-wide gene expression dysregulation in Down’s syndrome
A Letourneau, FA Santoni, X Bonilla, MR Sailani, D Gonzalez, J Kind, ...
Nature 508 (7496), 345-350, 2014
3172014
The tumor profiler study: integrated, multi-omic, functional tumor profiling for clinical decision support
A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, N Toussaint, ...
Cancer cell, 2020
1162020
Perturbations of genes essential for Müllerian duct and Wölffian duct development in Mayer-Rokitansky-Küster-Hauser syndrome
N Chen, S Zhao, A Jolly, L Wang, H Pan, J Yuan, S Chen, A Koch, C Ma, ...
The American Journal of Human Genetics 108 (2), 337-345, 2021
592021
SCIM: universal single-cell matching with unpaired feature sets
SG Stark, J Ficek, F Locatello, X Bonilla, S Chevrier, F Singer, G Rätsch, ...
Bioinformatics 36 (Supplement_2), i919-i927, 2020
532020
DNA-methylation patterns in trisomy 21 using cells from monozygotic twins
MR Sailani, FA Santoni, A Letourneau, C Borel, P Makrythanasis, ...
PloS one 10 (8), e0135555, 2015
532015
Building an international consortium for tracking coronavirus health status
E Segal, F Zhang, X Lin, G King, O Shalem, S Shilo, WE Allen, ...
Nature medicine 26 (8), 1161-1165, 2020
412020
Allele-specific expression: applications in cancer and technical considerations
CD Robles-Espinoza, P Mohammadi, X Bonilla, M Gutierrez-Arcelus
Current opinion in genetics & development 66, 10-19, 2021
312021
Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency
P Forny, X Bonilla, D Lamparter, W Shao, T Plessl, C Frei, A Bingisser, ...
Nature Metabolism 5 (1), 80-95, 2023
282023
Establishing standardized immune phenotyping of metastatic melanoma by digital pathology
B Sobottka, M Nowak, AL Frei, M Haberecker, S Merki, MP Levesque, ...
Laboratory investigation 101 (12), 1561-1570, 2021
282021
Human genome meeting 2016: Houston, TX, USA. 28 February-2 March 2016
AK Srivastava, Y Wang, R Huang, C Skinner, T Thompson, L Pollard, ...
Human genomics 10, 1-40, 2016
232016
scAmpi—A versatile pipeline for single-cell RNA-seq analysis from basics to clinics
A Bertolini, M Prummer, MA Tuncel, U Menzel, ML Rosano-González, ...
PLoS computational biology 18 (6), e1010097, 2022
152022
No evidence for the presence of genetic variants predisposing to psychotic disorders on the non-deleted 22q11.2 allele of VCFS patients
ASE Guipponi M, Santoni F, Schneider M, Gehrig C, Bustillo XB, Kates WR ...
Translational Psychiatry, 2017
92017
Functional characteristics of a broad spectrum of TBX6 variants in Mayer-Rokitansky-Küster-Hauser syndrome
C Ma, N Chen, A Jolly, S Zhao, Z Coban-Akdemir, W Tian, J Kang, Y Ye, ...
Genetics in Medicine 24 (11), 2262-2273, 2022
62022
Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-coa mutase deficiency
P Forny, X Bonilla, D Lamparter, W Shao, T Plessl, C Frei, A Bingisser, ...
BMJ: British medical journal, 38, 2022
32022
Correction: Corrigendum: Domains of genome-wide gene expression dysregulation in Down’s syndrome
A Letourneau, FA Santoni, X Bonilla, M Reza Sailani, D Gonzalez, J Kind, ...
Nature 531 (7594), 400-400, 2016
32016
Single-cell landscape of innate and acquired drug resistance in acute myeloid leukemia
R Wegmann, X Bonilla, R Casanova, S Chevrier, R Coelho, C Esposito, ...
Nature Communications 15 (1), 9402, 2024
22024
A deep learning approach for improved detection of homologous recombination deficiency from shallow genomic profiles
G Andre, T Coletta, C Pozzorini, AC Marques, J Bieler, R Kempfer, ...
bioRxiv, 2022.07. 06.498851, 2022
12022
Identification de nouveaux gènes impliqués dans les carcinomes basocellulaires sporadiques
L Parmentier, X Bonilla, B King, F Bezrukov, G Kaya, V Zoete, ...
Annales de Dermatologie et de Vénéréologie 143 (12), S185-S186, 2016
12016
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