Naomi Habib
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Multiplex genome engineering using CRISPR/Cas systems
L Cong, FA Ran, D Cox, S Lin, R Barretto, N Habib, PD Hsu, X Wu, ...
Science 339 (6121), 819-823, 2013
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
S Konermann, MD Brigham, AE Trevino, J Joung, OO Abudayyeh, ...
Nature 517 (7536), 583-588, 2015
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals
BR Carone, L Fauquier, N Habib, JM Shea, CE Hart, R Li, C Bock, C Li, ...
Cell 143 (7), 1084-1096, 2010
Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5′ sites
S Schwartz, MR Mumbach, M Jovanovic, T Wang, K Maciag, GG Bushkin, ...
Cell reports 8 (1), 284-296, 2014
Densely interconnected transcriptional circuits control cell states in human hematopoiesis
N Novershtern, A Subramanian, LN Lawton, RH Mak, WN Haining, ...
Cell 144 (2), 296-309, 2011
Massively parallel single-nucleus RNA-seq with DroNc-seq
N Habib, I Avraham-Davidi, A Basu, T Burks, K Shekhar, M Hofree, ...
Nature methods 14 (10), 955-958, 2017
In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9
L Swiech, M Heidenreich, A Banerjee, N Habib, Y Li, J Trombetta, M Sur, ...
Nature biotechnology 33 (1), 102-106, 2015
Disease-associated astrocytes in Alzheimer’s disease and aging
N Habib, C McCabe, S Medina, M Varshavsky, D Kitsberg, ...
Nature neuroscience 23 (6), 701-706, 2020
Comparative functional genomics of the fission yeasts
N Rhind, Z Chen, M Yassour, DA Thompson, BJ Haas, N Habib, ...
Science 332 (6032), 930-936, 2011
Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
N Habib, Y Li, M Heidenreich, L Swiech, I Avraham-Davidi, JJ Trombetta, ...
Science 353 (6302), 925-928, 2016
Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer’s disease
M Olah, V Menon, N Habib, MF Taga, Y Ma, CJ Yung, M Cimpean, ...
Nature communications 11 (1), 6129, 2020
Methods, systems, and apparatus for identifying target sequences for cas enzymes or crispr-cas systems for target sequences and conveying results thereof
F Zhang, N Habib
US Patent App. 14/104,900, 2014
Structure and function of a transcriptional network activated by the MAPK Hog1
AP Capaldi, T Kaplan, Y Liu, N Habib, A Regev, N Friedman, EK O'Shea
Nature genetics 40 (11), 1300-1306, 2008
A cellular and spatial map of the choroid plexus across brain ventricles and ages
N Dani, RH Herbst, C McCabe, GS Green, K Kaiser, JP Head, J Cui, ...
Cell 184 (11), 3056-3074. e21, 2021
Stroke genetics informs drug discovery and risk prediction across ancestries
A Mishra, R Malik, T Hachiya, T Jürgenson, S Namba, DC Posner, ...
Nature 611 (7934), 115-123, 2022
Nuclei multiplexing with barcoded antibodies for single-nucleus genomics
JT Gaublomme, B Li, C McCabe, A Knecht, Y Yang, E Drokhlyansky, ...
Nature communications 10 (1), 2907, 2019
Methods for determining spatial and temporal gene expression dynamics in single cells
A Regev, F Zhang, N Habib, Y Li, M Heidenreich, L Swiech, B Anindita, ...
US Patent App. 16/087,036, 2019
A functional selection model explains evolutionary robustness despite plasticity in regulatory networks
N Habib, I Wapinski, H Margalit, A Regev, N Friedman
Molecular systems biology 8 (1), 619, 2012
Arboretum: reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
S Roy, I Wapinski, J Pfiffner, C French, A Socha, J Konieczka, N Habib, ...
Genome Research 23 (6), 1039-1050, 2013
A novel Bayesian DNA motif comparison method for clustering and retrieval
N Habib, T Kaplan, H Margalit, N Friedman
PLoS computational biology 4 (2), e1000010, 2008
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