| Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models MR Garvin, E T. Prates, M Pavicic, P Jones, BK Amos, A Geiger, MB Shah, ... Genome biology 21, 1-26, 2020 | 63 | 2020 |
| Can exascale computing and explainable artificial intelligence applied to plant biology deliver on the United Nations sustainable development goals? J Streich, J Romero, JGFM Gazolla, D Kainer, A Cliff, ET Prates, JB Brown, ... Current opinion in biotechnology 61, 217-225, 2020 | 50 | 2020 |
| A high-performance computing implementation of iterative random forest for the creation of predictive expression networks A Cliff, J Romero, D Kainer, A Walker, A Furches, D Jacobson Genes 10 (12), 996, 2019 | 35 | 2019 |
| NF-κB perturbation reveals unique immunomodulatory functions in Prx1+ fibroblasts that promote development of atopic dermatitis KI Ko, JJ Merlet, BP DerGarabedian, H Zhen, Y Suzuki-Horiuchi, ... Science translational medicine 14 (630), eabj0324, 2022 | 26 | 2022 |
| Neurotransmitter networks in mouse prefrontal cortex are reconfigured by isoflurane anesthesia X Zhang, AG Baer, JM Price, PC Jones, BJ Garcia, J Romero, AM Cliff, ... Journal of neurophysiology 123 (6), 2285-2296, 2020 | 25 | 2020 |
| Reusability First: Toward FAIR Workflows M Wolf, J Logan, K Mehta, D Jacobson, M Cashman, AM Walker, ... 2021 IEEE International Conference on Cluster Computing (CLUSTER), 444-455, 2021 | 15 | 2021 |
| Evaluating the performance of random forest and iterative random forest based methods when applied to gene expression data AM Walker, A Cliff, J Romero, MB Shah, P Jones, JGFM Gazolla, ... Computational and Structural Biotechnology Journal 20, 3372-3386, 2022 | 14 | 2022 |
| Identification of novel, replicable genetic risk loci for suicidal thoughts and behaviors among US military veterans NA Kimbrel, AE Ashley-Koch, XJ Qin, JH Lindquist, ME Garrett, ... JAMA psychiatry 80 (2), 135-145, 2023 | 12 | 2023 |
| Rapid expansion of SARS-CoV-2 variants of concern is a result of adaptive epistasis MR Garvin, ET Prates, J Romero, A Cliff, MG JGF, M Pickholz, M Pavicic, ... | 9* | 2021 |
| Exploring the role of plant lysin motif receptor-like kinases in regulating plant-microbe interactions in the bioenergy crop Populus KR Cope, ET Prates, JI Miller, ONA Demerdash, M Shah, D Kainer, A Cliff, ... Computational and Structural Biotechnology Journal 21, 1122-1139, 2023 | 2 | 2023 |
| Digging deeper into GWAS signal using GRIN implicates additional genes contributing to suicidal behavior KA Sullivan, M Lane, M Cashman, JI Miller, M Pavicic, AM Walker, A Cliff, ... medRxiv, 2022.04. 20.22273895, 2022 | 2 | 2022 |
| Using iterative random forest to find geospatial environmental and Sociodemographic predictors of suicide attempts M Pavicic, AM Walker, KA Sullivan, J Lagergren, A Cliff, J Romero, ... Frontiers in psychiatry 14, 1178633, 2023 | 1 | 2023 |
| Running Ensemble Workflows at Extreme Scale: Lessons Learned and Path Forward K Mehta, A Cliff, F Suter, AM Walker, M Wolf, D Jacobson, S Klasky 2022 IEEE 18th International Conference on e-Science (e-Science), 284-294, 2022 | 1 | 2022 |
| Using Explainable-AI to Find Geospatial Environmental and Sociodemographic Predictors of Suicide Attempts M Pavicic, AM Walker, KA Sullivan, J Lagergren, A Cliff, J Romero, ... medRxiv, 2022.04. 26.22274333, 2022 | 1 | 2022 |
| Determination of permissive and restraining cancer-associated fibroblast (DeCAF) subtypes XL Peng, E Kharitonova, J Kearney, Y Xu, P Chan, C Luan, B Belt, ... Cancer Research 84 (6_Supplement), 6213-6213, 2024 | | 2024 |
| Combination of tumor and CAF subtypes better predict response to neoadjuvant therapy in pancreatic cancer J Lee, J Kearney, P Chan, E Kharitonova, A Hariharan, M LaBella, ... ANNALS OF SURGICAL ONCOLOGY 31 (1), S22-S22, 2024 | | 2024 |
| First-in-Class Humanized Antibody against Alternatively Spliced Tissue Factor Augments Anti-Metastatic Efficacy of Chemotherapy in a Preclinical Model of Pancreatic Ductal … CS Lewis, C Backman, S Ahsan, A Cliff, A Hariharan, JJ Yeh, X Zhang, ... International Journal of Molecular Sciences 25 (5), 2580, 2024 | | 2024 |
| Abstract A085: First-in-class humanized antibody targeting alternatively spliced tissue factor augments anti-metastatic efficacy of chemotherapy in a preclinical model of … CS Lewis, C Backman, S Ahsan, A Cliff, A Hariharan, JJ Yeh, DPS Sohal, ... Cancer Research 84 (2_Supplement), A085-A085, 2024 | | 2024 |
| First-in-class humanized antibody targeting alternatively spliced tissue factor augments anti-metastatic efficacy of chemotherapy in a preclinical model of pancreatic ductal … CS Lewis, C Backman, S Ahsan, A Cliff, A Hariharan, JJ Yeh, DPS Sohal, ... CANCER RESEARCH 84 (2), 2024 | | 2024 |
| Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach ET Prates, MR Garvin, P Jones, JI Miller, KA Sullivan, A Cliff, ... SARS-CoV-2: Methods and Protocols, 317-351, 2022 | | 2022 |
Daniel JacobsonComputational Systems Biologist, Distinguished Research Scientist, Oak Ridge National LaboratoryVerified email at ornl.gov
