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Anna Niarakis
Anna Niarakis
Professor, HDR, University of Toulouse III- Paul Sabatier
Verified email at univ-evry.fr - Homepage
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Year
Curcumin-decorated nanoliposomes with very high affinity for amyloid-β1-42 peptide
S Mourtas, M Canovi, C Zona, D Aurilia, A Niarakis, B La Ferla, ...
Biomaterials 32 (6), 1635-1645, 2011
2652011
Effect of curcumin-associated and lipid ligand-functionalized nanoliposomes on aggregation of the Alzheimer's Aβ peptide
M Taylor, S Moore, S Mourtas, A Niarakis, F Re, C Zona, B La Ferla, ...
Nanomedicine: Nanotechnology, Biology and Medicine 7 (5), 541-550, 2011
1732011
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms
M Ostaszewski, A Mazein, ME Gillespie, I Kuperstein, A Niarakis, ...
Scientific data 7 (1), 136, 2020
1472020
Uptake and permeability studies of BBB-targeting immunoliposomes using the hCMEC/D3 cell line
E Markoutsa, G Pampalakis, A Niarakis, IA Romero, B Weksler, ...
European journal of pharmaceutics and biopharmaceutics 77 (2), 265-274, 2011
1472011
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
Molecular systems biology 17 (10), e10387, 2021
852021
Building digital twins of the human immune system: toward a roadmap
R Laubenbacher, A Niarakis, T Helikar, G An, B Shapiro, RS Malik-Sheriff, ...
NPJ digital medicine 5 (1), 64, 2022
662022
Automated inference of Boolean models from molecular interaction maps using CaSQ
SS Aghamiri, V Singh, A Naldi, T Helikar, S Soliman, A Niarakis
Bioinformatics, 2020
642020
Community-driven roadmap for integrated disease maps
M Ostaszewski, S Gebel, I Kuperstein, A Mazein, A Zinovyev, U Dogrusoz, ...
Briefings in bioinformatics 20 (2), 659-670, 2019
632019
RA-map: Building a state-of-the-art interactive knowledge base for rheumatoid arthritis
AN Vidisha Singh, George D Kalliolias, Marek Ostaszewski, Maëva Veyssiere ...
Database 2020 (2020), 2020
322020
Boolean modelling as a logic-based dynamic approach in systems medicine
AA Hemedan, A Niarakis, R Schneider, M Ostaszewski
Computational and Structural Biotechnology Journal 20, 3161-3172, 2022
292022
Computational systems biology approach for the study of rheumatoid arthritis: from a molecular map to a dynamical model
V Singh, M Ostaszewski, GD Kalliolias, G Chiocchia, R Olaso, ...
Genomics and computational biology 4 (1), 2018
272018
A practical guide to mechanistic systems modeling in biology using a logic-based approach
A Niarakis, T Helikar
Briefings in bioinformatics 22 (4), bbaa236, 2021
252021
Metabolic Reprogramming of Fibroblasts as Therapeutic Target in Rheumatoid Arthritis and Cancer: Deciphering Key Mechanisms Using Computational Systems Biology Approaches
S Aghakhani, N Zerrouk, A Niarakis
Cancers 13 (1), 35, 2021
242021
Computational modeling of the main signaling pathways involved in mast cell activation
A Niarakis, Y Bounab, L Grieco, R Roncagalli, AM Hesse, J Garin, ...
Fc Receptors, Current Topics in Microbiology and Immunology, 69-93, 2014
222014
Proteomic analysis of the SH2domain-containing leukocyte protein of 76 kDa (SLP76) interactome
Y Bounab, B Iannascoli, L Grieco, Y Couté, A Niarakis, R Roncagalli, ...
Molecular & Cellular Proteomics 12 (10), 2874-2889, 2013
22*2013
Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC] 2 2019 CoLoMoTo/SysMod Workshop
A Niarakis, M Kuiper, M Ostaszewski, RS Malik Sheriff, C Casals-Casas, ...
Briefings in bioinformatics 22 (2), 1848-1859, 2021
202021
Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference
N Zerrouk, Q Miagoux, A Dispot, M Elati, A Niarakis
Scientific reports 10 (1), 16236, 2020
192020
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling
V Touré, Å Flobak, A Niarakis, S Vercruysse, M Kuiper
Briefings in Bioinformatics 22 (4), bbaa390, 2021
182021
Antiovarian antibodies in primary Sjogren’s syndrome
K Euthymiopoulou, AJ Aletras, P Ravazoula, A Niarakis, D Daoussis, ...
Rheumatology international 27, 1149-1155, 2007
162007
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
A Niarakis, D Waltemath, J Glazier, F Schreiber, SM Keating, D Nickerson, ...
Briefings in bioinformatics 23 (4), bbac212, 2022
152022
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