Foivos Gypas

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Mihaela ZavolanProfessor of Computational Biology, Biozentrum, University of BaselVerified email at unibas.ch
Alexander KanitzBiozentrum, University of BaselVerified email at unibas.ch
Andreas R. GruberPaperpile LLCVerified email at paperpile.com
Rafal GumiennyUniversity of Basel, BiozentrumVerified email at unibas.ch
Frederic AllainProfessor of BioNMRVerified email at mol.biol.ethz.ch
Andreas J. GruberUniversity of KonstanzVerified email at uni-konstanz.de
Tsaousis GeorgiosFaculty of Biology, National and Kapodistrian University of Athens. Genekor MSAVerified email at biol.uoa.gr
STAVROS HAMODRAKASVerified email at biol.uoa.gr
Helge GrosshansResearch Groupleader, FMIVerified email at fmi.ch
Sarah CarlScailyte AGVerified email at scailyte.com
Daniel HessHead Protein Analysis, Friedrich Miescher Institut for Biomedical ResearchVerified email at fmi.ch
Oliver MühlemannProfessor of BiochemistryVerified email at dcb.unibe.ch
Evangelos D KarousisSenior Researcher / LecturerVerified email at dcb.unibe.ch
Andreas MentisIASO, General Maternity and Gynecology ClinicVerified email at iaso.gr
Christophe KunzUniversity of BaselVerified email at unibas.ch
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerified email at unibas.ch
Michalis ZervakisTechnical University of CreteVerified email at display.tuc.gr
Stelios SfakianakisComputational BioMedicine Laboratory, Institute of Computer Science, FORTHVerified email at ics.forth.gr
Riba Andrea
Maria KatsantoniUniversity of BaselVerified email at unibas.ch

Foivos Gypas

Novartis Institutes for Biomedical Research (NIBR)

Verified email at novartis.com - Homepage

Bioinformatics Data Science Software Development Computational RNA Biology


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Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data A Kanitz, F Gypas, AJ Gruber, AR Gruber, G Martin, M Zavolan Genome biology 16 (1), 1-26, 2015	147	2015
High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq R Gumienny, DJ Jedlinski, A Schmidt, F Gypas, G Martin, A Vina-Vilaseca, ... Nucleic acids research 45 (5), 2341-2353, 2017	47	2017
Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced amyotrophic lateral sclerosis D Jutzi, S Campagne, R Schmidt, S Reber, J Mechtersheimer, F Gypas, ... Nature communications 11 (1), 1-14, 2020	22	2020
Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms AJ Gruber, F Gypas, A Riba, R Schmidt, M Zavolan Nature methods 15 (10), 832-836, 2018	17	2018
Protease-mediated processing of Argonaute proteins controls small RNA association RK Gudipati, K Braun, F Gypas, D Hess, J Schreier, SH Carl, RF Ketting, ... Molecular cell 81 (11), 2388-2402. e8, 2021	8	2021
mpMoRFsDB: a database of molecular recognition features in membrane proteins F Gypas, GN Tsaousis, SJ Hamodrakas Bioinformatics 29 (19), 2517-2518, 2013	8	2013
Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells ED Karousis, F Gypas, M Zavolan, O Mühlemann Genome biology 22 (1), 1-23, 2021	5	2021
Human enteric microbiome: Its role in health and disease ΑFA Mentis, F Gypas, AF Mentis Archives of Hellenic Medicine 30 (3), 272-288, 2013	4	2013
Ewing sarcoma breakpoint region 1 prevents transcription-associated genome instability N Mittal, C Kunz, F Gypas, S Kishore, G Martin, F Wenzel, ... bioRxiv, 034215, 2015	3	2015
Gene expression signatures of a preclinical mouse model during colorectal cancer progression under low-dose metronomic chemotherapy H Ho-Xuan, G Lehmann, P Glazar, F Gypas, N Eichner, K Heizler, ... Cancers 13 (1), 49, 2020	2	2020
A disease annotation study of gene signatures in a breast cancer microarray dataset F Gypas, ES Bei, M Zervakis, S Sfakianakis 2011 Annual International Conference of the IEEE Engineering in Medicine and …, 2011	2	2011
ZARP: An automated workflow for processing of RNA-seq data M Katsantoni, F Gypas, CJ Herrmann, D Burri, M Bak, P Iborra, K Agarwal, ... bioRxiv, 2021		2021
Computational methods for the identification and quantification of transcript isoforms from next generation sequencing data F Gypas University_of_Basel, 2018		2018
Human microbiome and the methods of its study – metagenomics. F Gypas, ΑFA Mentis Acta Microbiologica Hellenica 59 (2), 7-16, 2014		2014

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