| The consensus molecular subtypes of colorectal cancer J Guinney, R Dienstmann, X Wang, A De Reyniès, A Schlicker, ... Nature medicine 21 (11), 1350-1356, 2015 | 1842 | 2015 |
| Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences C Soneson, MI Love, MD Robinson F1000Research 4, 2015 | 888 | 2015 |
| A comparison of methods for differential expression analysis of RNA-seq data C Soneson, M Delorenzi BMC bioinformatics 14 (1), 91, 2013 | 798 | 2013 |
| Distal and proximal colon cancers differ in terms of molecular, pathological, and clinical features E Missiaglia, B Jacobs, G D'ario, AF Di Narzo, C Soneson, E Budinska, ... Annals of oncology 25 (10), 1995-2001, 2014 | 356 | 2014 |
| Bias, robustness and scalability in single-cell differential expression analysis C Soneson, MD Robinson Nature methods 15 (4), 255, 2018 | 199 | 2018 |
| Serum neurofilament light chain in early relapsing remitting MS is increased and correlates with CSF levels and with MRI measures of disease severity J Kuhle, C Barro, G Disanto, A Mathias, C Soneson, G Bonnier, Ö Yaldizli, ... Multiple Sclerosis Journal 22 (12), 1550-1559, 2016 | 132 | 2016 |
| Long-lasting stem cell–like memory CD8+ T cells with a naïve-like profile upon yellow fever vaccination SAF Marraco, C Soneson, L Cagnon, PO Gannon, M Allard, SA Maillard, ... Science translational medicine 7 (282), 282ra48-282ra48, 2015 | 108 | 2015 |
| A systematic performance evaluation of clustering methods for single-cell RNA-seq data A Duò, MD Robinson, C Soneson F1000Research 7, 2018 | 80 | 2018 |
| A glioma classification scheme based on coexpression modules of EGFR and PDGFRA Y Sun, W Zhang, D Chen, Y Lv, J Zheng, H Lilljebjörn, L Ran, Z Bao, ... Proceedings of the National Academy of Sciences 111 (9), 3538-3543, 2014 | 74 | 2014 |
| Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage C Soneson, KL Matthes, M Nowicka, CW Law, MD Robinson Genome biology 17 (1), 1-15, 2016 | 72 | 2016 |
| Early changes in the hypothalamic region in prodromal Huntington disease revealed by MRI analysis C Soneson, M Fontes, Y Zhou, V Denisov, JS Paulsen, D Kirik, Å Petersén, ... Neurobiology of disease 40 (3), 531-543, 2010 | 71 | 2010 |
| Colorectal cancer subtyping consortium (CRCSC) identification of a consensus of molecular subtypes. R Dienstmann, J Guinney, M Delorenzi, A De Reynies, P Roepman, ... Journal of Clinical Oncology 32 (15_suppl), 3511-3511, 2014 | 66 | 2014 |
| Integrative analysis of gene expression and copy number alterations using canonical correlation analysis C Soneson, H Lilljebjörn, T Fioretos, M Fontes BMC bioinformatics 11 (1), 191, 2010 | 66 | 2010 |
| Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3′-to-5′ RNA exonuclease processing U6 small nuclear RNA V Shchepachev, H Wischnewski, E Missiaglia, C Soneson, CM Azzalin Cell reports 2 (4), 855-865, 2012 | 60 | 2012 |
| The correlation pattern of acquired copy number changes in 164 ETV6/RUNX1-positive childhood acute lymphoblastic leukemias H Lilljebjörn, C Soneson, A Andersson, J Heldrup, M Behrendtz, ... Human molecular genetics 19 (16), 3150-3158, 2010 | 55 | 2010 |
| Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ... Genome biology 19 (1), 1-17, 2018 | 49 | 2018 |
| Modulation of mTOR signalling triggers the formation of stem cell-like memory T cells G Scholz, C Jandus, L Zhang, C Grandclément, IC Lopez-Mejia, ... EBioMedicine 4, 50-61, 2016 | 49 | 2016 |
| Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification MI Love, C Soneson, R Patro F1000Research 7, 2018 | 38 | 2018 |
| iCOBRA: open, reproducible, standardized and live method benchmarking C Soneson, MD Robinson Nature Methods 13 (4), 283, 2016 | 31 | 2016 |
| Orchestrating single-cell analysis with Bioconductor RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ... Nature Methods, 1-9, 2019 | 28 | 2019 |
Mark D. RobinsonAssociate Professor of Statistical Genomics, University of ZurichVerified email at imls.uzh.ch
