Charlotte Soneson
Charlotte Soneson
Research Associate, FMI, Basel
Verified email at - Homepage
Cited by
Cited by
The consensus molecular subtypes of colorectal cancer
J Guinney, R Dienstmann, X Wang, A De Reyniès, A Schlicker, ...
Nature medicine 21 (11), 1350-1356, 2015
Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
C Soneson, MI Love, MD Robinson
F1000Research 4, 2015
A comparison of methods for differential expression analysis of RNA-seq data
C Soneson, M Delorenzi
BMC bioinformatics 14 (1), 91, 2013
Distal and proximal colon cancers differ in terms of molecular, pathological, and clinical features
E Missiaglia, B Jacobs, G D'ario, AF Di Narzo, C Soneson, E Budinska, ...
Annals of oncology 25 (10), 1995-2001, 2014
Bias, robustness and scalability in single-cell differential expression analysis
C Soneson, MD Robinson
Nature methods 15 (4), 255, 2018
Serum neurofilament light chain in early relapsing remitting MS is increased and correlates with CSF levels and with MRI measures of disease severity
J Kuhle, C Barro, G Disanto, A Mathias, C Soneson, G Bonnier, Ö Yaldizli, ...
Multiple Sclerosis Journal 22 (12), 1550-1559, 2016
Long-lasting stem cell–like memory CD8+ T cells with a naïve-like profile upon yellow fever vaccination
SAF Marraco, C Soneson, L Cagnon, PO Gannon, M Allard, SA Maillard, ...
Science translational medicine 7 (282), 282ra48-282ra48, 2015
A systematic performance evaluation of clustering methods for single-cell RNA-seq data
A Duò, MD Robinson, C Soneson
F1000Research 7, 2018
A glioma classification scheme based on coexpression modules of EGFR and PDGFRA
Y Sun, W Zhang, D Chen, Y Lv, J Zheng, H Lilljebjörn, L Ran, Z Bao, ...
Proceedings of the National Academy of Sciences 111 (9), 3538-3543, 2014
Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage
C Soneson, KL Matthes, M Nowicka, CW Law, MD Robinson
Genome biology 17 (1), 1-15, 2016
Early changes in the hypothalamic region in prodromal Huntington disease revealed by MRI analysis
C Soneson, M Fontes, Y Zhou, V Denisov, JS Paulsen, D Kirik, Å Petersén, ...
Neurobiology of disease 40 (3), 531-543, 2010
Colorectal cancer subtyping consortium (CRCSC) identification of a consensus of molecular subtypes.
R Dienstmann, J Guinney, M Delorenzi, A De Reynies, P Roepman, ...
Journal of Clinical Oncology 32 (15_suppl), 3511-3511, 2014
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis
C Soneson, H Lilljebjörn, T Fioretos, M Fontes
BMC bioinformatics 11 (1), 191, 2010
Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3′-to-5′ RNA exonuclease processing U6 small nuclear RNA
V Shchepachev, H Wischnewski, E Missiaglia, C Soneson, CM Azzalin
Cell reports 2 (4), 855-865, 2012
The correlation pattern of acquired copy number changes in 164 ETV6/RUNX1-positive childhood acute lymphoblastic leukemias
H Lilljebjörn, C Soneson, A Andersson, J Heldrup, M Behrendtz, ...
Human molecular genetics 19 (16), 3150-3158, 2010
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ...
Genome biology 19 (1), 1-17, 2018
Modulation of mTOR signalling triggers the formation of stem cell-like memory T cells
G Scholz, C Jandus, L Zhang, C Grandclément, IC Lopez-Mejia, ...
EBioMedicine 4, 50-61, 2016
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification
MI Love, C Soneson, R Patro
F1000Research 7, 2018
Orchestrating single-cell analysis with Bioconductor
RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ...
Nature methods 17 (2), 137-145, 2020
diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering
LM Weber, M Nowicka, C Soneson, MD Robinson
Communications biology 2 (1), 1-11, 2019
The system can't perform the operation now. Try again later.
Articles 1–20