Charlotte Soneson
Charlotte Soneson
Research Associate, FMI, Basel
Verified email at fmi.ch - Homepage
TitleCited byYear
The consensus molecular subtypes of colorectal cancer
J Guinney, R Dienstmann, X Wang, A De Reyniès, A Schlicker, ...
Nature medicine 21 (11), 1350-1356, 2015
15562015
A comparison of methods for differential expression analysis of RNA-seq data
C Soneson, M Delorenzi
BMC bioinformatics 14 (1), 91, 2013
7372013
Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
C Soneson, MI Love, MD Robinson
F1000Research 4, 2015
6752015
Distal and proximal colon cancers differ in terms of molecular, pathological, and clinical features
E Missiaglia, B Jacobs, G D'ario, AF Di Narzo, C Soneson, E Budinska, ...
Annals of oncology 25 (10), 1995-2001, 2014
3172014
Bias, robustness and scalability in single-cell differential expression analysis
C Soneson, MD Robinson
Nature methods 15 (4), 255, 2018
1482018
Serum neurofilament light chain in early relapsing remitting MS is increased and correlates with CSF levels and with MRI measures of disease severity
J Kuhle, C Barro, G Disanto, A Mathias, C Soneson, G Bonnier, Ö Yaldizli, ...
Multiple Sclerosis Journal 22 (12), 1550-1559, 2016
1082016
Long-lasting stem cell–like memory CD8+ T cells with a naïve-like profile upon yellow fever vaccination
SAF Marraco, C Soneson, L Cagnon, PO Gannon, M Allard, SA Maillard, ...
Science translational medicine 7 (282), 282ra48-282ra48, 2015
942015
A glioma classification scheme based on coexpression modules of EGFR and PDGFRA
Y Sun, W Zhang, D Chen, Y Lv, J Zheng, H Lilljebjörn, L Ran, Z Bao, ...
Proceedings of the National Academy of Sciences 111 (9), 3538-3543, 2014
672014
Early changes in the hypothalamic region in prodromal Huntington disease revealed by MRI analysis
C Soneson, M Fontes, Y Zhou, V Denisov, JS Paulsen, D Kirik, Å Petersén, ...
Neurobiology of disease 40 (3), 531-543, 2010
672010
Colorectal cancer subtyping consortium (CRCSC) identification of a consensus of molecular subtypes.
R Dienstmann, J Guinney, M Delorenzi, A De Reynies, P Roepman, ...
Journal of Clinical Oncology 32 (15_suppl), 3511-3511, 2014
662014
Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage
C Soneson, KL Matthes, M Nowicka, CW Law, MD Robinson
Genome biology 17 (1), 12, 2016
632016
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis
C Soneson, H Lilljebjörn, T Fioretos, M Fontes
BMC bioinformatics 11 (1), 191, 2010
602010
Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3′-to-5′ RNA exonuclease processing U6 small nuclear RNA
V Shchepachev, H Wischnewski, E Missiaglia, C Soneson, CM Azzalin
Cell reports 2 (4), 855-865, 2012
552012
The correlation pattern of acquired copy number changes in 164 ETV6/RUNX1-positive childhood acute lymphoblastic leukemias
H Lilljebjörn, C Soneson, A Andersson, J Heldrup, M Behrendtz, ...
Human molecular genetics 19 (16), 3150-3158, 2010
532010
A systematic performance evaluation of clustering methods for single-cell RNA-seq data
A Duò, MD Robinson, C Soneson
F1000Research 7, 2018
482018
Modulation of mTOR signalling triggers the formation of stem cell-like memory T cells
G Scholz, C Jandus, L Zhang, C Grandclément, IC Lopez-Mejia, ...
EBioMedicine 4, 50-61, 2016
452016
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ...
Genome biology 19 (1), 24, 2018
372018
iCOBRA: open, reproducible, standardized and live method benchmarking
C Soneson, MD Robinson
Nature Methods 13 (4), 283, 2016
302016
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification
MI Love, C Soneson, R Patro
F1000Research 7, 2018
272018
compcodeR—an R package for benchmarking differential expression methods for RNA-seq data
C Soneson
Bioinformatics 30 (17), 2517-2518, 2014
252014
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Articles 1–20