Charlotte Soneson
Charlotte Soneson
Research Associate, FMI, Basel
Verified email at fmi.ch - Homepage
Title
Cited by
Cited by
Year
The consensus molecular subtypes of colorectal cancer
J Guinney, R Dienstmann, X Wang, A De Reyniès, A Schlicker, ...
Nature medicine 21 (11), 1350-1356, 2015
16992015
Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
C Soneson, MI Love, MD Robinson
F1000Research 4, 2015
7882015
A comparison of methods for differential expression analysis of RNA-seq data
C Soneson, M Delorenzi
BMC bioinformatics 14 (1), 91, 2013
7672013
Distal and proximal colon cancers differ in terms of molecular, pathological, and clinical features
E Missiaglia, B Jacobs, G D'ario, AF Di Narzo, C Soneson, E Budinska, ...
Annals of oncology 25 (10), 1995-2001, 2014
3432014
Bias, robustness and scalability in single-cell differential expression analysis
C Soneson, MD Robinson
Nature methods 15 (4), 255, 2018
1782018
Serum neurofilament light chain in early relapsing remitting MS is increased and correlates with CSF levels and with MRI measures of disease severity
J Kuhle, C Barro, G Disanto, A Mathias, C Soneson, G Bonnier, Ö Yaldizli, ...
Multiple Sclerosis Journal 22 (12), 1550-1559, 2016
1242016
Long-lasting stem cell–like memory CD8+ T cells with a naïve-like profile upon yellow fever vaccination
SAF Marraco, C Soneson, L Cagnon, PO Gannon, M Allard, SA Maillard, ...
Science translational medicine 7 (282), 282ra48-282ra48, 2015
1012015
A glioma classification scheme based on coexpression modules of EGFR and PDGFRA
Y Sun, W Zhang, D Chen, Y Lv, J Zheng, H Lilljebjörn, L Ran, Z Bao, ...
Proceedings of the National Academy of Sciences 111 (9), 3538-3543, 2014
722014
Early changes in the hypothalamic region in prodromal Huntington disease revealed by MRI analysis
C Soneson, M Fontes, Y Zhou, V Denisov, JS Paulsen, D Kirik, Å Petersén, ...
Neurobiology of disease 40 (3), 531-543, 2010
702010
Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage
C Soneson, KL Matthes, M Nowicka, CW Law, MD Robinson
Genome biology 17 (1), 12, 2016
672016
Colorectal cancer subtyping consortium (CRCSC) identification of a consensus of molecular subtypes.
R Dienstmann, J Guinney, M Delorenzi, A De Reynies, P Roepman, ...
Journal of Clinical Oncology 32 (15_suppl), 3511-3511, 2014
662014
A systematic performance evaluation of clustering methods for single-cell RNA-seq data
A Duò, MD Robinson, C Soneson
F1000Research 7, 2018
652018
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis
C Soneson, H Lilljebjörn, T Fioretos, M Fontes
BMC bioinformatics 11 (1), 191, 2010
612010
Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3′-to-5′ RNA exonuclease processing U6 small nuclear RNA
V Shchepachev, H Wischnewski, E Missiaglia, C Soneson, CM Azzalin
Cell reports 2 (4), 855-865, 2012
562012
The correlation pattern of acquired copy number changes in 164 ETV6/RUNX1-positive childhood acute lymphoblastic leukemias
H Lilljebjörn, C Soneson, A Andersson, J Heldrup, M Behrendtz, ...
Human molecular genetics 19 (16), 3150-3158, 2010
552010
Modulation of mTOR signalling triggers the formation of stem cell-like memory T cells
G Scholz, C Jandus, L Zhang, C Grandclément, IC Lopez-Mejia, ...
EBioMedicine 4, 50-61, 2016
482016
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ...
Genome biology 19 (1), 24, 2018
432018
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification
MI Love, C Soneson, R Patro
F1000Research 7, 2018
322018
iCOBRA: open, reproducible, standardized and live method benchmarking
C Soneson, MD Robinson
Nature Methods 13 (4), 283, 2016
302016
compcodeR—an R package for benchmarking differential expression methods for RNA-seq data
C Soneson
Bioinformatics 30 (17), 2517-2518, 2014
262014
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