Torbjørn Rognes
Torbjørn Rognes
University of Oslo & Oslo University Hospital, Norway
Adresse e-mail validée de ifi.uio.no - Page d'accueil
TitreCitée parAnnée
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic Acids Research 35 (9), 3100-3108, 2007
36992007
VSEARCH: a versatile open source tool for metagenomics
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
PeerJ 4, e2584, 2016
15652016
VSEARCH software
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
URL: http://github.com/torognes/vsearch 15524, 2015
1547*2015
DNA repair in mammalian cells
AB Robertson, A Klungland, T Rognes, I Leiros
Cellular and molecular life sciences 66 (6), 981-993, 2009
6012009
Swarm: robust and fast clustering method for amplicon-based studies
F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn
PeerJ 2, 593, 2014
369*2014
Opposite base‐dependent reactions of a human base excision repair enzyme on DNA containing 7, 8‐dihydro‐8‐oxoguanine and abasic sites
M Bjørås, L Luna, B Johnsen, E Hoff, T Haug, T Rognes, E Seeberg
The EMBO journal 16 (20), 6314-6322, 1997
3611997
Six-fold speed-up of Smith–Waterman sequence database searches using parallel processing on common microprocessors
T Rognes, E Seeberg
Bioinformatics 16 (8), 699-706, 2000
2792000
Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8‐oxoguanine and other oxidation products in DNA
I Morland, V Rolseth, L Luna, T Rognes, M Bjørås, E Seeberg
Nucleic acids research 30 (22), 4926-4936, 2002
2752002
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
T Rognes
BMC Bioinformatics 12 (1), 221, 2011
2062011
Swarm v2: highly-scalable and high-resolution amplicon clustering
F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn
PeerJ 3, e1420, 2015
1772015
The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative …
I Alseth, L Eide, M Pirovano, T Rognes, E Seeberg, M Bjørås
Molecular and cellular biology 19 (5), 3779-3787, 1999
1621999
Genome dynamics in major bacterial pathogens
OH Ambur, T Davidsen, SA Frye, SV Balasingham, K Lagesen, T Rognes, ...
FEMS microbiology reviews 33 (3), 453-470, 2009
1042009
Biased distribution of DNA uptake sequences towards genome maintenance genes
T Davidsen, EA Rødland, K Lagesen, E Seeberg, T Rognes, T Tønjum
Nucleic acids research 32 (3), 1050-1058, 2004
932004
ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches
T Rognes
Nucleic acids research 29 (7), 1647-1652, 2001
872001
Cell-cycle regulation, intracellular sorting and induced overexpression of the human NTH1 DNA glycosylase involved in removal of formamidopyrimidine residues from DNA
L Luna, M Bjørås, E Hoff, T Rognes, E Seeberg
Mutation Research/DNA Repair 460 (2), 95-104, 2000
762000
Incision at hypoxanthine residues in DNA by a mammalian homologue of the Escherichia coli antimutator enzyme endonuclease V
A Moe, J Ringvoll, LM Nordstrand, L Eide, M Bjørås, E Seeberg, ...
Nucleic acids research 31 (14), 3893-3900, 2003
752003
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), e00003-15, 2016
702016
ALKBH1 is a histone H2A dioxygenase involved in neural differentiation
R Ougland, D Lando, I Jonson, JA Dahl, MN Moen, LM Nordstrand, ...
Stem cells 30 (12), 2672-2682, 2012
702012
Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming
P Sætrom, R Sneve, KI Kristiansen, O Snøve, T Grünfeld, T Rognes, ...
Nucleic acids research 33 (10), 3263-3270, 2005
672005
Characterization of novel mutations in the catalytic domain of the PCSK9 gene
J Cameron, ØL Holla, JK Laerdahl, MA Kulseth, T Ranheim, T Rognes, ...
Journal of internal medicine 263 (4), 420-431, 2008
622008
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