David Lyon
David Lyon
University of Zurich and Swiss Institute of Bioinformatics
Verified email at uzh.ch - Homepage
Cited by
Cited by
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells
SC Larsen, KB Sylvestersen, A Mund, D Lyon, M Mullari, MV Madsen, ...
Science signaling 9 (443), rs9-rs9, 2016
Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation
IA Hendriks, D Lyon, C Young, LJ Jensen, ACO Vertegaal, ML Nielsen
Nature structural & molecular biology 24 (3), 325, 2017
Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism
H Doerfler, D Lyon, T Nägele, X Sun, L Fragner, F Hadacek, V Egelhofer, ...
Metabolomics 9 (3), 564-574, 2013
Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform
A Mari, D Lyon, L Fragner, P Montoro, S Piacente, S Wienkoop, ...
Metabolomics 9 (3), 599-607, 2013
Accurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the E. coli acetylome
BT Weinert, S Satpathy, BK Hansen, D Lyon, LJ Jensen, C Choudhary
Molecular & Cellular Proteomics 16 (5), 759-769, 2017
Comprehensive cell-specific protein analysis in early and late pollen development from diploid microsporocytes to pollen tube growth
T Ischebeck, L Valledor, D Lyon, S Gingl, M Nagler, M Meijón, V Egelhofer, ...
Molecular & Cellular Proteomics 13 (1), 295-310, 2014
Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny
E Cappellini, F Welker, L Pandolfi, J Ramos-Madrigal, D Samodova, ...
Nature 574 (7776), 103-107, 2019
Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation
BK Hansen, R Gupta, L Baldus, D Lyon, T Narita, M Lammers, ...
Nature communications 10 (1), 1-11, 2019
Site-specific characterization of endogenous SUMOylation across species and organs
IA Hendriks, D Lyon, D Su, NH Skotte, JA Daniel, LJ Jensen, ML Nielsen
Nature communications 9 (1), 1-17, 2018
Systems-wide analysis of serine ADP-ribosylation reveals widespread occurrence and site-specific overlap with phosphorylation
SC Larsen, IA Hendriks, D Lyon, LJ Jensen, ML Nielsen
Cell reports 24 (9), 2493-2505. e4, 2018
Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls
D Belstrøm, RR Jersie-Christensen, D Lyon, C Damgaard, LJ Jensen, ...
PeerJ 4, e2433, 2016
mzGroupAnalyzer-Predicting pathways and novel chemical structures from untargeted high-throughput metabolomics data
H Doerfler, X Sun, L Wang, D Engelmeier, D Lyon, W Weckwerth
PloS one 9 (5), e96188, 2014
Possible role of nutritional priming for early salt and drought stress responses in Medicago truncatula
C Staudinger, V Mehmeti, R Turetschek, D Lyon, V Egelhofer, ...
Frontiers in plant science 3, 285, 2012
Palaeoproteomic profiling of conservation layers on a 14th century Italian wall painting
M Mackie, P Rüther, D Samodova, F Di Gianvincenzo, C Granzotto, ...
Angewandte Chemie International Edition 57 (25), 7369-7374, 2018
Drought and recovery: independently regulated processes highlighting the importance of protein turnover dynamics and translational regulation in Medicago truncatula
D Lyon, MA Castillejo, V Mehmeti-Tershani, C Staudinger, C Kleemaier, ...
Molecular & Cellular Proteomics 15 (6), 1921-1937, 2016
Quantitative metaproteomics of medieval dental calculus reveals individual oral health status
RR Jersie-Christensen, LT Lanigan, D Lyon, M Mackie, D Belstrøm, ...
Nature communications 9 (1), 1-12, 2018
Avoiding abundance bias in the functional annotation of posttranslationally modified proteins
C Schölz, D Lyon, JC Refsgaard, LJ Jensen, C Choudhary, BT Weinert
Nature methods 12 (11), 1003-1004, 2015
Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments
V Egelhofer, W Hoehenwarter, D Lyon, W Weckwerth, S Wienkoop
Nature protocols 8 (3), 595-601, 2013
Medicago truncatula and Glycine max: Different Drought Tolerance and Similar Local Response of the Root Nodule Proteome
E Gil-Quintana, D Lyon, C Staudinger, S Wienkoop, EM González
Journal of proteome research 14 (12), 5240-5251, 2015
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