| The contrasting phylodynamics of human influenza B viruses D Vijaykrishna, EC Holmes, U Joseph, M Fourment, YCF Su, R Halpin, ... Elife 4, e05055, 2015 | 230 | 2015 |
| Taming the BEAST—A Community Teaching Material Resource for BEAST 2 J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ... Systematic biology 67 (1), 170-174, 2017 | 120 | 2017 |
| Outbreak investigation for toxigenic Corynebacterium diphtheriae wound infections in refugees from Northeast Africa and Syria in Switzerland and Germany by whole genome sequencing DM Meinel, R Kuehl, R Zbinden, V Boskova, C Garzoni, D Fadini, ... Clinical Microbiology and Infection 22 (12), 1003. e1-1003. e8, 2016 | 78 | 2016 |
| Inference of epidemiological dynamics based on simulated phylogenies using birth-death and coalescent models V Boskova, S Bonhoeffer, T Stadler PLoS computational biology 10 (11), e1003913, 2014 | 76 | 2014 |
| Systematic biases in DNA copy number originate from isolation procedures S van Heesch, M Mokry, V Boskova, W Junker, R Mehon, P Toonen, ... Genome biology 14 (4), R33, 2013 | 49 | 2013 |
| Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks J Voznica, A Zhukova, V Boskova, E Saulnier, F Lemoine, ... Nature Communications 13 (1), 1-14, 2022 | 45 | 2022 |
| The influence of phylodynamic model specifications on parameter estimates of the Zika virus epidemic V Boskova, T Stadler, C Magnus Virus evolution 4 (1), vex044, 2018 | 30 | 2018 |
| Maximum-likelihood tree estimation using codon substitution models with multiple partitions S Zoller, V Boskova, M Anisimova Molecular biology and evolution 32 (8), 2208-2216, 2015 | 19 | 2015 |
| PIQMEE: Bayesian phylodynamic method for analysis of large datasets with duplicate sequences V Boskova, T Stadler Molecular Biology and Evolution, msaa136, 2020 | 15 | 2020 |
| Deep learning from phylogenies to uncover the transmission dynamics of epidemics J Voznica, A Zhukova, V Boskova, E Saulnier, F Lemoine, ... bioRxiv, 2021 | 8 | 2021 |
| Decoding Genomes: From Sequences to Phylodynamics T Stadler, C Magnus, T Vaughan, J Barido-Sottani, V Bošková, J Huisman, ... | 1 | 2024 |
| Pathogen phylodynamics: better, smarter and faster V Boskova ETH Zurich, 2017 | | 2017 |
| Taming the Beast Workshop Priors and starting values V Bošková, C Zhang | | 2016 |
| Visualization of viral populations A Töpfer, V Boskova, M Däumer, A Thielen, D Seifert, N Beerenwinkel F1000Research 4, 2013 | | 2013 |
| Estimation of epidemiological parameters based on simulated phylogenetic trees using birth-death process and coalescent models V Boskova ETH-Zürich, 2013 | | 2013 |
