Frederic Bertels

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Paul B RaineyMax-Planck Institute for Evolutionary Biology, Plön, Germany & ESPCI, Paris, FranceVerified email at evolbio.mpg.de
Christina StraubMSCA Postdoc, CMESS, University of ViennaVerified email at univie.ac.at
Ashley luBioinformatician, The New Zealand Plant and Food Research InstitiueVerified email at cme.vib-kuleuven.be
Honour C. McCannMax Planck Research Group Leader, Max Planck Institute for BiologyVerified email at tuebingen.mpg.de
Jenna GallieIndependent Research Group Leader at the Max Planck Institute for Evolutionary BiologyVerified email at evolbio.mpg.de
Roland RegoesETH ZurichVerified email at env.ethz.ch
David S. GuttmanProfessor, University of TorontoVerified email at utoronto.ca
Andrew GleaveNew Zealand Institute of Plant and Food Research LtdVerified email at plantandfood.co.nz
Mark WohlersBiometricianVerified email at plantandfood.co.nz
Joel VannesteThe New Zealand Institute for Plant & Food Research LimitedVerified email at plantandfood.co.nz
Erik RikkerinkPrincipal Scientist, Plant Pathogen Environment Group, Plant and Food Research (Plant & FoodVerified email at plantandfood.co.nz
Matthew David TempletonNew Zealand Institute of Plant and Food Research, School of Biological Sciences University ofVerified email at plantandfood.co.nz
Gayle FergusonSchool of Natural and Computational Sciences, Massey University, Auckland, New ZealandVerified email at massey.ac.nz
Olin SilanderSenior Research Fellow, Liggins Institute, University of AucklandVerified email at auckland.ac.nz
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerified email at unibas.ch
Mikhail PachkovUniversity of Basel, Swiss Institute of BioinformaticsVerified email at unibas.ch
Philippe RemigiINRA-CNRS ToulouseVerified email at inra.fr
Lavisha ParabDoctoral candidateVerified email at evolbio.mpg.de
Beatrix JonesAssociate Professor, Statistics, University of AucklandVerified email at auckland.ac.nz
Justin M. O'SullivanLiggins Institute, University of AucklandVerified email at auckland.ac.nz

Frederic Bertels

Max Planck Institute for Evolutionary Biology

Verified email at evolbio.mpg.de - Homepage

molecular evolution bacterial genome evolution evolution of selfish genetic elements virus evolution


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Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads F Bertels, OK Silander, M Pachkov, PB Rainey, E van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014	486	2014
Genomic Analysis of the Kiwifruit Pathogen Pseudomonas syringae pv. actinidiae Provides Insight into the Origins of an Emergent Plant Disease HC McCann, EHA Rikkerink, F Bertels, M Fiers, A Lu, J Rees-George, ... PLoS pathogens 9 (7), e1003503, 2013	304	2013
Global identification of yeast chromosome interactions using Genome conformation capture CDM Rodley, F Bertels, B Jones, JM O'Sullivan Fungal Genetics and Biology 46 (11), 879-886, 2009	150	2009
The perils of plenty: what are we going to do with all these genes? A Rodrigo, F Bertels, J Heled, R Noder, H Shearman, P Tsai Philosophical Transactions of the Royal Society of London B: Biological …, 2008	100	2008
Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria F Bertels, PB Rainey PLoS genetics 7 (6), e1002132, 2011	61	2011
Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. V. Insight into the Niche Specialist Fuzzy Spreader Compels Revision of the Model Pseudomonas Radiation GC Ferguson, F Bertels, PB Rainey Genetics 195 (4), 1319-1335, 2013	60	2013
Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens J Gallie, E Libby, F Bertels, P Remigi, CB Jendresen, GC Ferguson, ... PLoS biology 13 (3), e1002109, 2015	59	2015
Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity F Bertels, A Marzel, G Leventhal, V Mitov, J Fellay, HF Günthard, J Böni, ... Molecular biology and evolution 35 (1), 27-37, 2018	49	2018
Parallel evolution of HIV-1 in a long-term experiment F Bertels, C Leemann, KJ Metzner, RR Regoes Molecular biology and evolution 36 (11), 2400-2414, 2019	26	2019
Curiosities of REPINs and RAYTs F Bertels, PB Rainey Mobile Genetic Elements 1 (4), 262-301, 2011	23	2011
Transposable elements promote the evolution of genome streamlining B van Dijk, F Bertels, L Stolk, N Takeuchi, PB Rainey Philosophical Transactions of the Royal Society B 377 (1842), 20200477, 2022	22*	2022
Discovering complete quasispecies in bacterial genomes F Bertels, CS Gokhale, A Traulsen Genetics 206 (4), 2149-2157, 2017	21	2017
Repeated phenotypic evolution by different genetic routes in Pseudomonas fluorescens SBW25. J Gallie, F Bertels, P Remigi, GC Ferguson, S Nestmann, PB Rainey Molecular biology and evolution, 2019	19	2019
Estimating the mutational fitness effects distribution during early HIV infection E Bons, F Bertels, RR Regoes Virus evolution 4 (2), vey029, 2018	17	2018
Recombination of Virulence Genes in Divergent Acidovorax avenae Strains That Infect a Common Host Q Zeng, J Wang, F Bertels, PR Giordano, MI Chilvers, RB Huntley, ... Molecular Plant-Microbe Interactions 30 (10), 813-828, 2017	15	2017
Identification and characterization of domesticated bacterial transposases F Bertels, J Gallie, PB Rainey Genome Biology and Evolution 9 (8), 2110-2121, 2017	15	2017
Convergent evolution as an indicator for selection during acute HIV-1 infection F Bertels, KJ Metzner, RR Regoes PCI Evolutionary Biology, 2018	14	2018
Stepwise Evolution of E. coli C and ΦX174 Reveals Unexpected Lipopolysaccharide (LPS) Diversity J Romeyer Dherbey, L Parab, J Gallie, F Bertels Molecular Biology and Evolution 40 (7), msad154, 2023	13*	2023
How sequence populations persist inside bacterial genomes HJ Park, CS Gokhale, F Bertels Genetics 217 (4), iyab027, 2021	11	2021
Ancient Darwinian replicators nested within eubacterial genomes F Bertels, PB Rainey BioEssays 45 (2), 2200085, 2023	7	2023

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