Frederic Bertels

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Paul B RaineyMax-Planck Institute for Evolutionary Biology, Plön, Germany & ESPCI, Paris, FranceVerified email at evolbio.mpg.de
Roland RegoesETH ZurichVerified email at env.ethz.ch
Ashley luBioinformatician, The New Zealand Plant and Food Research InstitiueVerified email at cme.vib-kuleuven.be
David S. GuttmanProfessor, University of TorontoVerified email at utoronto.ca
Andrew GleaveNew Zealand Institute of Plant and Food Research LtdVerified email at plantandfood.co.nz
Mark WohlersBiometricianVerified email at plantandfood.co.nz
Joel VannesteThe New Zealand Institute for Plant & Food Research LimitedVerified email at plantandfood.co.nz
Christina StraubPostdoc, Institute of Environmental Science and Research (ESR)Verified email at esr.cri.nz
Erik RikkerinkPrincipal Scientist, Plant Pathogen Environment Group, Plant and Food Research (Plant & FoodVerified email at plantandfood.co.nz
Honour C. McCannMax Planck Research Group Leader, Max Planck Institute for BiologyVerified email at tuebingen.mpg.de
Jenna GallieIndependent Research Group Leader at the Max Planck Institute for Evolutionary BiologyVerified email at evolbio.mpg.de
Gayle FergusonSchool of Natural and Computational Sciences, Massey University, Auckland, New ZealandVerified email at massey.ac.nz
Olin SilanderAssociate Professor, Massey University, New ZealandVerified email at massey.ac.nz
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerified email at unibas.ch
Matthew David TempletonNew Zealand Institute of Plant and Food Research, School of Biological Sciences University ofVerified email at plantandfood.co.nz
Philippe RemigiINRA-CNRS ToulouseVerified email at inra.fr
Beatrix JonesAssociate Professor, Statistics, University of AucklandVerified email at auckland.ac.nz
Justin M. O'SullivanLiggins Institute, University of AucklandVerified email at auckland.ac.nz
Chaitanya S. GokhaleMax Planck Institute for Evolutionary BiologyVerified email at evolbio.mpg.de
Peter TsaiThe University of AucklandVerified email at auckland.ac.nz

Frederic Bertels

Max Planck Institute for Evolutionary Biology

Verified email at evolbio.mpg.de - Homepage

molecular evolution bacterial genome evolution evolution of selfish genetic elements virus evolution


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Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads F Bertels, OK Silander, M Pachkov, PB Rainey, E van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014	366	2014
Genomic Analysis of the Kiwifruit Pathogen Pseudomonas syringae pv. actinidiae Provides Insight into the Origins of an Emergent Plant Disease HC McCann, EHA Rikkerink, F Bertels, M Fiers, A Lu, J Rees-George, ... PLoS pathogens 9 (7), e1003503, 2013	264	2013
Global identification of yeast chromosome interactions using Genome conformation capture CDM Rodley, F Bertels, B Jones, JM O'Sullivan Fungal Genetics and Biology 46 (11), 879-886, 2009	143	2009
The perils of plenty: what are we going to do with all these genes? A Rodrigo, F Bertels, J Heled, R Noder, H Shearman, P Tsai Philosophical Transactions of the Royal Society of London B: Biological …, 2008	95	2008
Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria F Bertels, PB Rainey PLoS genetics 7 (6), e1002132, 2011	56	2011
Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. V. Insight into the Niche Specialist Fuzzy Spreader Compels Revision of the Model Pseudomonas Radiation GC Ferguson, F Bertels, PB Rainey Genetics 195 (4), 1319-1335, 2013	54	2013
Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens J Gallie, E Libby, F Bertels, P Remigi, CB Jendresen, GC Ferguson, ... PLoS biology 13 (3), e1002109, 2015	52	2015
Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity F Bertels, A Marzel, G Leventhal, V Mitov, J Fellay, HF Günthard, J Böni, ... Molecular biology and evolution 35 (1), 27-37, 2018	43	2018
Parallel evolution of HIV-1 in a long-term experiment F Bertels, C Leemann, KJ Metzner, RR Regoes Molecular biology and evolution 36 (11), 2400-2414, 2019	18	2019
Discovering complete quasispecies in bacterial genomes F Bertels, CS Gokhale, A Traulsen Genetics 206 (4), 2149-2157, 2017	18	2017
Curiosities of REPINs and RAYTs F Bertels, PB Rainey Mobile Genetic Elements 1 (4), 262-301, 2011	17	2011
Repeated phenotypic evolution by different genetic routes in Pseudomonas fluorescens SBW25. J Gallie, F Bertels, P Remigi, GC Ferguson, S Nestmann, PB Rainey Molecular biology and evolution, 2019	15	2019
Estimating the mutational fitness effects distribution during early HIV infection E Bons, F Bertels, RR Regoes Virus evolution 4 (2), vey029, 2018	15	2018
Recombination of Virulence Genes in Divergent Acidovorax avenae Strains That Infect a Common Host Q Zeng, J Wang, F Bertels, PR Giordano, MI Chilvers, RB Huntley, ... Molecular Plant-Microbe Interactions 30 (10), 813-828, 2017	13	2017
Transposable elements promote the evolution of genome streamlining B van Dijk, F Bertels, L Stolk, N Takeuchi, PB Rainey Philosophical Transactions of the Royal Society B 377 (1842), 20200477, 2022	11*	2022
Convergent evolution as an indicator for selection during acute HIV-1 infection F Bertels, KJ Metzner, RR Regoes PCI Evolutionary Biology, 2018	11	2018
Identification and characterization of domesticated bacterial transposases F Bertels, J Gallie, PB Rainey Genome Biology and Evolution 9 (8), 2110-2121, 2017	10	2017
How sequence populations persist inside bacterial genomes HJ Park, CS Gokhale, F Bertels Genetics 217 (4), iyab027, 2021	9*	2021
Ancient Darwinian replicators nested within eubacterial genomes F Bertels, PB Rainey BioEssays 45 (2), 2200085, 2023	3	2023
RAREFAN: a webservice to identify REPINs and RAYTs in bacterial genomes C Fortmann-Grote, J Irmer, F Bertels Peer Community Journal 3, 2023	1	2023

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