Pleuni S Pennings

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Joachim HermissonProfessor for Mathematics and Biology, University of ViennaVerified email at univie.ac.at
Dmitri A PetrovMichelle&Kevin Douglas Professor of Biology, Stanford, pdfs are free: http://petrov.stanford.eduVerified email at stanford.edu
Alison FederMiller Fellow in Integrative Biology, UC BerkeleyVerified email at berkeley.edu
Susanne FoitzikJohannes Gutenberg University MainzVerified email at uni-mainz.de
Tobias PammingerBayer Crop ScienceVerified email at bayer.com
Martin NowakProfessor of Mathematics and Biology, Harvard UniversityVerified email at harvard.edu
Daniel Ian Scholes RosenbloomAssociate Principal Scientist, Quantitative Pharmacometrics & Pharmacology, Merck ResearchVerified email at merck.com
Robert ShaferProfessor of Medicine, Stanford UniversityVerified email at stanford.edu
Adi SternTel-Aviv UniversityVerified email at tauex.tau.ac.il
Maoz GelbartTel-Aviv UniversityVerified email at mail.tau.ac.il
Susan P HolmesProfessor of Statistics, Stanford UniversityVerified email at stat.stanford.edu
Stefany Moreno-GámezMassachusetts Institute of TechnologyVerified email at mit.edu
Benjamin A WilsonFreenomeVerified email at alumni.stanford.edu
Sergey KryazhimskiyAssistant Professor in Ecology, Behavior, and Evolution, UCSDVerified email at ucsd.edu
Alison L HillAssistant Professor, Institute for Computational Medicine, Johns Hopkins UniversityVerified email at jhmi.edu
Ulf DieckmannAdvancing Systems Analysis Program, International Institute for Applied Systems AnalysisVerified email at iiasa.ac.at
Géza MeszénaProfessor, Department of Biological Physics, Institute of Physics, Eötvös University, BudapestVerified email at ttk.elte.hu
Michael KoppAix-Marseille UniversityVerified email at univ-amu.fr
Claus RuefflerUppsala UniversityVerified email at ebc.uu.se
Carine L. CollinIndependent Scholar

Pleuni S Pennings

Associate Professor, San Francisco State University

Verified email at sfsu.edu - Homepage

population genetics drug resistance HIV selective sweeps data-analysis


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Soft sweeps: molecular population genetics of adaptation from standing genetic variation J Hermisson, PS Pennings Genetics 169 (4), 2335-2352, 2005	908	2005
Soft sweeps II—molecular population genetics of adaptation from recurrent mutation or migration PS Pennings, J Hermisson Molecular biology and evolution 23 (5), 1076-1084, 2006	301	2006
Soft sweeps III: the signature of positive selection from recurrent mutation PS Pennings, J Hermisson PLoS Genet 2 (12), e186, 2006	265	2006
Soft sweeps and beyond: understanding the patterns and probabilities of selection footprints under rapid adaptation J Hermisson, PS Pennings Methods in Ecology and Evolution 8 (6), 700-716, 2017	139	2017
HIV drug resistance: problems and perspectives PS Pennings Infectious Disease Reports 5 (1S), 5, 2013	129	2013
Loss and recovery of genetic diversity in adapting populations of HIV PS Pennings, S Kryazhimskiy, J Wakeley PLoS Genet 10 (1), e1004000, 2014	111	2014
Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance S Moreno-Gamez, AL Hill, DIS Rosenbloom, DA Petrov, MA Nowak, ... Proceedings of the National Academy of Sciences 112 (22), E2874-E2883, 2015	96	2015
Standing genetic variation and the evolution of drug resistance in HIV PS Pennings PLoS Comput Biol 8 (6), e1002527, 2012	83	2012
An analytically tractable model for competitive speciation PS Pennings, M Kopp, G Meszéna, U Dieckmann, J Hermisson The American Naturalist 171 (1), E44-E71, 2008	80	2008
Natural enemies and sex: how seed predators and pathogens contribute to sex-differential reproductive success in a gynodioecious plant C Collin, P Pennings, C Rueffler, A Widmer, J Shykoff Oecologia 131 (1), 94-102, 2002	79	2002
Evidence of adaptation from ancestral variation in young populations of beach mice VS Domingues, YP Poh, BK Peterson, PS Pennings, JD Jensen, ... Evolution: International Journal of Organic Evolution 66 (10), 3209-3223, 2012	68	2012
Wolbachia Bacteria Effects after Experimental Interspecific Transfers in Terrestrial Isopods T Rigaud, PS Pennings, P Juchault Journal of invertebrate pathology 77 (4), 251-257, 2001	67	2001
Increased host aggression as an induced defense against slave-making ants T Pamminger, I Scharf, PS Pennings, S Foitzik Behavioral Ecology 22 (2), 255-260, 2011	62	2011
Specialization and local adaptation of a fungal parasite on two host plant species as revealed by two fitness traits D Sicard, PS Pennings, C Grandclément, J Acosta, O Kaltz, JA Shykoff Evolution 61 (1), 27-41, 2007	55	2007
More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1 AF Feder, SY Rhee, SP Holmes, RW Shafer, DA Petrov, PS Pennings Elife 5, e10670, 2016	49	2016
Polygenic adaptation: From sweeps to subtle frequency shifts I Höllinger, PS Pennings, J Hermisson PLoS genetics 15 (3), e1008035, 2019	42	2019
Classroom sound can be used to classify teaching practices in college science courses MT Owens, SB Seidel, M Wong, TE Bejines, S Lietz, JR Perez, S Sit, ... Proceedings of the National Academy of Sciences 114 (12), 3085-3090, 2017	40	2017
Fighting microbial drug resistance: a primer on the role of evolutionary biology in public health GG Perron, RF Inglis, PS Pennings, S Cobey Evolutionary applications 8 (3), 211-222, 2015	39	2015
Similar evolutionary potentials in an obligate ant parasite and its two host species PS Pennings, A Achenbach, S Foitzik Journal of Evolutionary Biology 24 (4), 871-886, 2011	35	2011
Soft sweeps and beyond: understanding the patterns and probabilities of selection footprints under rapid adaptation. Methods Ecol. Evol. 8: 700–716 J Hermisson, PS Pennings	32	2017

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