| Polymer physics of chromosome large-scale 3D organisation AM Chiariello, C Annunziatella, S Bianco, A Esposito, M Nicodemi Scientific reports 6 (1), 29775, 2016 | 175 | 2016 |
| Polymer physics predicts the effects of structural variants on chromatin architecture S Bianco, DG Lupiáñez, AM Chiariello, C Annunziatella, K Kraft, ... Nature genetics 50 (5), 662-667, 2018 | 166 | 2018 |
| Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains AM Oudelaar, JOJ Davies, LLP Hanssen, JM Telenius, R Schwessinger, ... Nature genetics 50 (12), 1744-1751, 2018 | 159 | 2018 |
| Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis BK Kragesteen, M Spielmann, C Paliou, V Heinrich, R Schöpflin, ... Nature genetics 50 (10), 1463-1473, 2018 | 156 | 2018 |
| Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation N Kubo, H Ishii, X Xiong, S Bianco, F Meitinger, R Hu, JD Hocker, ... Nature structural & molecular biology 28 (2), 152-161, 2021 | 152 | 2021 |
| Preformed chromatin topology assists transcriptional robustness of Shh during limb development C Paliou, P Guckelberger, R Schöpflin, V Heinrich, A Esposito, ... Proceedings of the National Academy of Sciences 116 (25), 12390-12399, 2019 | 125 | 2019 |
| Cell-type specialization is encoded by specific chromatin topologies W Winick-Ng, A Kukalev, I Harabula, L Zea-Redondo, D Szabó, M Meijer, ... Nature 599 (7886), 684-691, 2021 | 95 | 2021 |
| Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations GI Dellino, F Palluzzi, AM Chiariello, R Piccioni, S Bianco, L Furia, ... Nature genetics 51 (6), 1011-1023, 2019 | 83 | 2019 |
| Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells M Barbieri, SQ Xie, E Torlai Triglia, AM Chiariello, S Bianco, I de Santiago, ... Nature structural & molecular biology 24 (6), 515-524, 2017 | 83 | 2017 |
| Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation M Conte, L Fiorillo, S Bianco, AM Chiariello, A Esposito, M Nicodemi Nature communications 11 (1), 3289, 2020 | 80 | 2020 |
| CTCF mediates dosage-and sequence-context-dependent transcriptional insulation by forming local chromatin domains H Huang, Q Zhu, A Jussila, Y Han, B Bintu, C Kern, M Conte, Y Zhang, ... Nature genetics 53 (7), 1064-1074, 2021 | 76 | 2021 |
| Predicting chromatin architecture from models of polymer physics S Bianco, AM Chiariello, C Annunziatella, A Esposito, M Nicodemi Chromosome Research 25, 25-34, 2017 | 47 | 2017 |
| Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin L Fiorillo, F Musella, M Conte, R Kempfer, AM Chiariello, S Bianco, ... Nature methods 18 (5), 482-490, 2021 | 37 | 2021 |
| A dynamic folded hairpin conformation is associated with α-globin activation in erythroid cells AM Chiariello, S Bianco, AM Oudelaar, A Esposito, C Annunziatella, ... Cell Reports 30 (7), 2125-2135. e5, 2020 | 36 | 2020 |
| Molecular dynamics simulations of the strings and binders switch model of chromatin C Annunziatella, AM Chiariello, A Esposito, S Bianco, L Fiorillo, ... Methods 142, 81-88, 2018 | 29 | 2018 |
| Computational approaches from polymer physics to investigate chromatin folding S Bianco, AM Chiariello, M Conte, A Esposito, L Fiorillo, F Musella, ... Current opinion in cell biology 64, 10-17, 2020 | 28 | 2020 |
| Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding M Conte, E Irani, AM Chiariello, A Abraham, S Bianco, A Esposito, ... Nature communications 13 (1), 4070, 2022 | 27 | 2022 |
| Polymer models of the hierarchical folding of the Hox-B chromosomal locus C Annunziatella, AM Chiariello, S Bianco, M Nicodemi Physical Review E 94 (4), 042402, 2016 | 24 | 2016 |
| Modeling single-molecule conformations of the HoxD region in mouse embryonic stem and cortical neuronal cells S Bianco, C Annunziatella, G Andrey, AM Chiariello, A Esposito, L Fiorillo, ... Cell reports 28 (6), 1574-1583. e4, 2019 | 21 | 2019 |
| Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes AR Ringel, Q Szabo, AM Chiariello, K Chudzik, R Schöpflin, P Rothe, ... Cell 185 (20), 3689-3704. e21, 2022 | 18 | 2022 |
