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Armin Töpfer
Armin Töpfer
Department of Biosystems Science and Engineering, ETH Zurich
Verified email at bsse.ethz.ch
Title
Cited by
Cited by
Year
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
13612019
Probabilistic inference of viral quasispecies subject to recombination
A Töpfer, O Zagordi, S Prabhakaran, V Roth, E Halperin, N Beerenwinkel
Journal of Computational Biology 20 (2), 113-123, 2013
169*2013
Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations
FD Giallonardo, A Töpfer, M Rey, S Prabhakaran, Y Duport, C Leemann, ...
Nucleic acids research 42 (14), e115-e115, 2014
1482014
Viral quasispecies assembly via maximal clique enumeration
A Töpfer, T Marschall, RA Bull, F Luciani, A Schönhuth, N Beerenwinkel
PLoS computational biology 10 (3), e1003515, 2014
1222014
Challenges in RNA virus bioinformatics
M Marz, N Beerenwinkel, C Drosten, M Fricke, D Frishman, IL Hofacker, ...
Bioinformatics 30 (13), 1793-1799, 2014
752014
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer
G Baid, DE Cook, K Shafin, T Yun, F Llinares-López, Q Berthet, ...
Nature Biotechnology 41 (2), 232-238, 2023
712023
A method for near full-length amplification and sequencing for six hepatitis C virus genotypes
RA Bull, AA Eltahla, C Rodrigo, SM Koekkoek, M Walker, MR Pirozyan, ...
BMC genomics 17, 1-10, 2016
702016
Sequencing approach to analyze the role of quasispecies for classical swine fever
A Töpfer, D Höper, S Blome, M Beer, N Beerenwinkel, N Ruggli, I Leifer
Virology 438 (1), 14-19, 2013
542013
Single-molecule sequencing reveals complex genome variation of hepatitis B virus during 15 years of chronic infection following liver transplantation
BD Betz-Stablein, A Töpfer, M Littlejohn, L Yuen, D Colledge, V Sozzi, ...
Journal of virology 90 (16), 7171-7183, 2016
452016
BioXSD: the common data-exchange format for everyday bioinformatics web services
M Kalaš, P Puntervoll, A Joseph, E Bartaševičiūtė, A Töpfer, ...
Bioinformatics 26 (18), i540-i546, 2010
332010
A comprehensive analysis of primer IDs to study heterogeneous HIV-1 populations
D Seifert, F Di Giallonardo, A Töpfer, J Singer, S Schmutz, HF Günthard, ...
Journal of molecular biology 428 (1), 238-250, 2016
322016
Deepconsensus: Gap-aware sequence transformers for sequence correction
G Baid, DE Cook, K Shafin, T Yun, F Llinares-Lopez, Q Berthet, ...
BioRxiv, 2021.08. 31.458403, 2021
152021
Highly-accurate long-read sequencing improves variant detection and assembly of a human genome. bioRxiv 519025
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Figure Legends Figure 1, 2019
92019
Library prep and bioinformatics improvements for full-length transcript sequencing on the PacBio sequel system
M Vierra, B Galvin, T Hon, H Ferrao, A Töpfer, Y Li, E Tseng
Plant and Animal Genome XXVII Conference, 2019
12019
Probabilistic viral quasispecies assembly
A Töpfer, N Beerenwinkel
Computational Methods for Next Generation Sequencing Data Analysis, 355-381, 2016
12016
P592: HiFi reads provide accurate detection of variants and DNA methylation in challenging regions of the genome
G Young, A Wenger, M Boitano, A Toepfer, C Lambert, P Baybayan, ...
Genetics in Medicine Open 1 (1), 2023
2023
Knowledge distillation for fast and accurate DNA sequence correction
A Belyaeva, J Shor, DE Cook, K Shafin, D Liu, A Töpfer, AM Wenger, ...
arXiv preprint arXiv:2211.09862, 2022
2022
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer
A Wenger, A Kolesnikov, AW Carroll, A Töpfer, AT Vaswani, C McLean, ...
2022
Comprehensive single-nucleotide, indel, structural, and copy-number variant detection in human genomes with PacBio HiFi reads
AM Wenger, WJ Rowell, A Topfer, L Hickey
EUROPEAN JOURNAL OF HUMAN GENETICS 28 (SUPPL 1), 600-600, 2020
2020
Comprehensive Single-Nucleotide, Indel, Structural, and Copy-Number Variant Detection in Human Genomes with PacBio HiFi Reads
W Rowell, A Wenger, L Hickey, A Toepfer
JOURNAL OF MOLECULAR DIAGNOSTICS 22 (11), S51-S51, 2020
2020
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