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Sonja Lehtinen
Sonja Lehtinen
Verified email at env.ethz.ch
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Cited by
Year
CATH: comprehensive structural and functional annotations for genome sequences
I Sillitoe, TE Lewis, A Cuff, S Das, P Ashford, NL Dawson, N Furnham, ...
Nucleic acids research 43 (D1), D376-D381, 2015
4752015
Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage
S Lehtinen, F Blanquart, NJ Croucher, P Turner, M Lipsitch, C Fraser
Proceedings of the National Academy of Sciences 114 (5), 1075-1080, 2017
1412017
Estimating the effects of non-pharmaceutical interventions on the number of new infections with COVID-19 during the first epidemic wave
N Banholzer, E Van Weenen, A Lison, A Cenedese, A Seeliger, ...
PLoS one 16 (6), e0252827, 2021
922021
Quantifying the impact of quarantine duration on COVID-19 transmission
P Ashcroft, S Lehtinen, DC Angst, N Low, S Bonhoeffer
Elife 10, e63704, 2021
912021
COVID-19 infectivity profile correction
P Ashcroft, JS Huisman, S Lehtinen, JA Bouman, CL Althaus, RR Regoes, ...
arXiv preprint arXiv:2007.06602, 2020
862020
Gene3D: expanding the utility of domain assignments
SD Lam, NL Dawson, S Das, I Sillitoe, P Ashford, D Lee, S Lehtinen, ...
Nucleic acids research 44 (D1), D404-D409, 2016
792016
On the evolutionary ecology of multidrug resistance in bacteria
S Lehtinen, F Blanquart, M Lipsitch, C Fraser, ...
PLoS pathogens 15 (5), e1007763, 2019
742019
On the relationship between serial interval, infectiousness profile and generation time
S Lehtinen, P Ashcroft, S Bonhoeffer
Journal of the Royal Society Interface 18 (174), 20200756, 2021
642021
The evolution of antibiotic resistance in a structured host population
F Blanquart, S Lehtinen, M Lipsitch, C Fraser
Journal of The Royal Society Interface 15 (143), 20180040, 2018
642018
Mathematical modelling for antibiotic resistance control policy: do we know enough?
GM Knight, NG Davies, C Colijn, F Coll, T Donker, DR Gifford, RE Glover, ...
BMC infectious diseases 19, 1-9, 2019
462019
An evolutionary model to predict the frequency of antibiotic resistance under seasonal antibiotic use, and an application to Streptococcus pneumoniae
F Blanquart, S Lehtinen, C Fraser
Proceedings of the Royal Society B: Biological Sciences 284 (1855), 20170679, 2017
462017
Factors favouring the evolution of multidrug resistance in bacteria
E Jacopin, S Lehtinen, F Débarre, F Blanquart
Journal of the Royal Society Interface 17 (168), 20200105, 2020
332020
Stress induces remodelling of yeast interaction and co-expression networks
S Lehtinen, FX Marsellach, S Codlin, A Schmidt, M Clément-Ziza, A Beyer, ...
Molecular BioSystems 9 (7), 1697-1707, 2013
312013
Evolutionary mechanisms that determine which bacterial genes are carried on plasmids
S Lehtinen, JS Huisman, S Bonhoeffer
Evolution Letters 5 (3), 290-301, 2021
282021
Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae
S Lehtinen, C Chewapreecha, J Lees, WP Hanage, M Lipsitch, ...
Science advances 6 (21), eaaz6137, 2020
282020
Test-trace-isolate-quarantine (TTIQ) intervention strategies after symptomatic COVID-19 case identification
P Ashcroft, S Lehtinen, S Bonhoeffer
PloS one 17 (2), e0263597, 2022
232022
Gene function prediction from functional association networks using kernel partial least squares regression
S Lehtinen, J Lees, J Bähler, J Shawe-Taylor, C Orengo
PloS one 10 (8), e0134668, 2015
172015
Plasmid co-infection: linking biological mechanisms to ecological and evolutionary dynamics
C Igler, JS Huisman, B Siedentop, S Bonhoeffer, S Lehtinen
Philosophical Transactions of the Royal Society B 377 (1842), 20200478, 2022
82022
Epidemiological dynamics of bacteriocin competition and antibiotic resistance
S Lehtinen, NJ Croucher, F Blanquart, C Fraser
Proceedings of the Royal Society B 289 (1984), 20221197, 2022
62022
Co-expression network models suggest that stress increases tolerance to mutations
S Lehtinen, J Bähler, C Orengo
Scientific reports 5 (1), 16726, 2015
52015
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Articles 1–20