WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ... Nucleic acids research 46 (D1), D661-D667, 2018 | 749 | 2018 |
WikiPathways: capturing the full diversity of pathway knowledge M Kutmon, A Riutta, N Nunes, K Hanspers, EL Willighagen, A Bohler, ... Nucleic acids research 44 (D1), D488-D494, 2016 | 452 | 2016 |
WikiPathways: connecting communities M Martens, A Ammar, A Riutta, A Waagmeester, DN Slenter, K Hanspers, ... Nucleic acids research 49 (D1), D613-D621, 2021 | 320 | 2021 |
exRNA atlas analysis reveals distinct extracellular RNA cargo types and their carriers present across human biofluids OD Murillo, W Thistlethwaite, J Rozowsky, SL Subramanian, R Lucero, ... Cell 177 (2), 463-477. e15, 2019 | 205 | 2019 |
Wikidata as a knowledge graph for the life sciences A Waagmeester, G Stupp, S Burgstaller-Muehlbacher, BM Good, M Griffith, ... Elife 9, e52614, 2020 | 80 | 2020 |
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 49 | 2021 |
Using the semantic web for rapid integration of WikiPathways with other biological online data resources A Waagmeester, M Kutmon, A Riutta, R Miller, EL Willighagen, CT Evelo, ... PLoS computational biology 12 (6), e1004989, 2016 | 49 | 2016 |
A Miller M Martens, A Ammar, A Riutta, A Waagmeester, DN Slenter, K Hanspers R., Digles, D., Lopes, EN, Ehrhart, F., et al, 2021 | 20 | 2021 |
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ... Clinical and translational science 15 (8), 1848-1855, 2022 | 14 | 2022 |
Pathway information extracted from 25 years of pathway figures K Hanspers, A Riutta, M Summer-Kutmon, AR Pico Genome biology 21 (1), 1-18, 2020 | 11 | 2020 |
Identifying genes in published pathway figure images A Riutta, K Hanspers, AR Pico bioRxiv, 379446, 2018 | 7 | 2018 |
Progress toward a universal biomedical data translator K Fecho, AE Thessen, SE Baranzini, C Bizon, JJ Hadlock, S Huang, ... Clinical and Translational Science 15 (8), 1838-1847, 2022 | 3 | 2022 |
Wikidata as a FAIR knowledge graph for the life sciences A Waagmeester, G Stupp, S Burgstaller-Muehlbacher, BM Good, M Griffith, ... bioRxiv, 799684, 2019 | 2 | 2019 |
25 Years of Pathway Figures K Hanspers, A Riutta, M Kutmon, AR Pico bioRxiv, 2020.05. 29.124503, 2020 | 1 | 2020 |
Aryl hydrocarbon receptor pathway M Summer-Kutmon, A Riutta, A Pico, E Weitz | | 2021 |
Constitutive androstane receptor pathway R Fijten, E Willighagen, K Hanspers, F Ehrhart, M Summer-Kutmon, ... | | 2021 |
Aryl hydrocarbon receptor M Summer-Kutmon, E Willighagen, A Riutta, A Pico, E Weitz | | 2021 |
Focal adhesion T Kelder, K Hanspers, A Pico, E Willighagen, Z Roudbari, D Truong, ... | | 2021 |
PI3K-Akt signaling pathway K Hanspers, A Riutta, E Willighagen, E Weitz | | 2021 |
BridgeDb 3.0. 4 CY Brenninkmeijer, E Willighagen, M Awasthi, S Soiland-Reyes, A Riutta, ... Zenodo, 2021 | | 2021 |