| RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor H Wang, S Marcišauskas, BJ Sánchez, I Domenzain, D Hermansson, ... PLoS computational biology 14 (10), e1006541, 2018 | 289 | 2018 |
| An atlas of human metabolism JL Robinson, P Kocabaş, H Wang, PE Cholley, D Cook, A Nilsson, ... Science signaling 13 (624), eaaz1482, 2020 | 271 | 2020 |
| A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism H Lu, F Li, BJ Sánchez, Z Zhu, G Li, I Domenzain, S Marcišauskas, ... Nature communications 10 (1), 3586, 2019 | 263 | 2019 |
| Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0 I Domenzain, B Sánchez, M Anton, EJ Kerkhoven, A Millán-Oropeza, ... Nature communications 13 (1), 3766, 2022 | 74 | 2022 |
| Genome-scale modeling drives 70-fold improvement of intracellular heme production in Saccharomyces cerevisiae OP Ishchuk, I Domenzain, BJ Sánchez, F Muñiz-Paredes, JL Martínez, ... Proceedings of the National Academy of Sciences 119 (30), e2108245119, 2022 | 34 | 2022 |
| Stress-induced expression is enriched for evolutionarily young genes in diverse budding yeasts TW Doughty, I Domenzain, A Millan-Oropeza, N Montini, PA de Groot, ... Nature Communications 11 (1), 2144, 2020 | 30 | 2020 |
| A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism L Österberg, I Domenzain, J Münch, J Nielsen, S Hohmann, M Cvijovic PLoS computational biology 17 (4), e1008891, 2021 | 21 | 2021 |
| Benchmarking accuracy and precision of intensity‐based absolute quantification of protein abundances in Saccharomyces cerevisiae BJ Sánchez, PJ Lahtvee, K Campbell, S Kasvandik, R Yu, I Domenzain, ... Proteomics 21 (6), 2000093, 2021 | 21 | 2021 |
| Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection H Lu, F Li, L Yuan, I Domenzain, R Yu, H Wang, G Li, Y Chen, B Ji, ... Molecular Systems Biology 17 (10), e10427, 2021 | 18 | 2021 |
| Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species I Domenzain, F Li, EJ Kerkhoven, V Siewers FEMS Yeast Research 21 (1), foab002, 2021 | 10 | 2021 |
| Identification of a novel gene required for competitive growth at high temperature in the thermotolerant yeast Kluyveromyces marxianus N Montini, TW Doughty, I Domenzain, DA Fenton, PV Baranov, ... Microbiology 168 (3), 001148, 2022 | 8 | 2022 |
| Computational biology predicts metabolic engineering targets for increased production of 102 valuable chemicals in yeast I Domenzain, Y Lu, J Shi, H Lu, J Nielsen bioRxiv, 2023.01. 31.526512, 2023 | 3 | 2023 |
| Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0 Y Chen, J Gustafsson, A Tafur Rangel, M Anton, I Domenzain, ... Nature Protocols, 1-39, 2024 | 2 | 2024 |
| A systems biology understanding of protein constraints in the metabolism of budding yeasts ID del Castillo Cerecer PQDT-Global, 2023 | | 2023 |
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
