| Low-affinity binding sites and the transcription factor specificity paradox in eukaryotes JF Kribelbauer, C Rastogi, HJ Bussemaker, RS Mann Annual review of cell and developmental biology 35, 357-379, 2019 | 166 | 2019 |
| Evolving insights on how cytosine methylation affects protein–DNA binding AC Dantas Machado, T Zhou, S Rao, P Goel, C Rastogi, A Lazarovici, ... Briefings in functional genomics 14 (1), 61-73, 2015 | 137 | 2015 |
| Timekeeping with electron spin states in diamond JS Hodges, NY Yao, D Maclaurin, C Rastogi, MD Lukin, D Englund Physical Review A 87 (3), 032118, 2013 | 103 | 2013 |
| SELEX-seq: A Method for Characterizing the Complete Repertoire of Binding Site Preferences for Transcription Factor Complexes TR Riley, M Slattery, N Abe, C Rastogi, R Mann, H Bussemaker Hox Genes: Methods and Protocols 17, 2014 | 100 | 2014 |
| Accurate and sensitive quantification of protein-DNA binding affinity C Rastogi, HT Rube, JF Kribelbauer, J Crocker, RE Loker, GD Martini, ... Proceedings of the National Academy of Sciences 115 (16), E3692-E3701, 2018 | 97 | 2018 |
| Prediction of protein–ligand binding affinity from sequencing data with interpretable machine learning HT Rube, C Rastogi, S Feng, JF Kribelbauer, A Li, B Becerra, LAN Melo, ... Nature biotechnology 40 (10), 1520-1527, 2022 | 59 | 2022 |
| A unified approach for quantifying and interpreting DNA shape readout by transcription factors HT Rube, C Rastogi, JF Kribelbauer, HJ Bussemaker Molecular systems biology 14 (2), e7902, 2018 | 40 | 2018 |
| Dewetting of the thin liquid bilayers on topographically patterned substrates: Formation of microchannel and microdot arrays D Bandyopadhyay, A Sharma, C Rastogi Langmuir 24 (24), 14048-14058, 2008 | 39 | 2008 |
| SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site L Zhang, GD Martini, HT Rube, JF Kribelbauer, C Rastogi, VD FitzPatrick, ... Genome research 28 (1), 111-121, 2018 | 38 | 2018 |
| In vivo Hox binding specificity revealed by systematic changes to a single cis regulatory module C Sánchez-Higueras, C Rastogi, R Voutev, HJ Bussemaker, RS Mann, ... Nature communications 10 (1), 3597, 2019 | 31 | 2019 |
| Context-dependent gene regulation by homeodomain transcription factor complexes revealed by shape-readout deficient proteins JF Kribelbauer, RE Loker, S Feng, C Rastogi, N Abe, HT Rube, ... Molecular cell 78 (1), 152-167. e11, 2020 | 29 | 2020 |
| Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors S Feng, C Rastogi, R Loker, WJ Glassford, H Tomas Rube, ... Nature Communications 13 (1), 3808, 2022 | 18 | 2022 |
| Ultracompact fabry-perot array for ultracompact hyperspectral imaging DR Englund, C Rastogi US Patent 9,778,113, 2017 | 7 | 2017 |
| Systems and Methods for an Optical Nanoscale Array for Sensing and Recording of Electrically Excitable Cells DR Englund, AA Lazar, C Rastogi, YB Slutskiy US Patent App. 14/104,931, 2014 | 5 | 2014 |
| Optimisation of TP53 reporters by systematic dissection of synthetic TP53 response elements M Trauernicht, C Rastogi, SG Manzo, HJ Bussemaker, B van Steensel Nucleic Acids Research 51 (18), 9690-9702, 2023 | | 2023 |
| Systems and methods for analyzing sequencing data HH Bussemaker, C Rastogi, HT Rube US Patent App. 17/476,113, 2021 | | 2021 |
| Quantifying sequence readout by transcription factors through principled analysis of high-throughput SELEX data H Rube, C Rastogi, J Kribelbauer, X Li, BV Do, H Bussemaker APS March Meeting Abstracts 2019, E65. 002, 2019 | | 2019 |
| Package ‘SELEX’ C Rastogi, D Liu, H Bussemaker, SR Java, MH Bussemaker | | 2015 |
| Symposium P: Three-Dimensional Architectures for Energy Generation and Storage JW Wong, B Dunn, G Li, E Yablonovitch, ... | | 2010 |
| Motif Discovery from SELEX-seq data C Rastogi, D Liu, H Bussemaker | | |
Harmen J. BussemakerColumbia UniversityVerified email at columbia.edu
