| The effect of human mobility and control measures on the COVID-19 epidemic in China MUG Kraemer, CH Yang, B Gutierrez, CH Wu, B Klein, DM Pigott, ... Science 368 (6490), 493-497, 2020 | 1132 | 2020 |
| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 603 | 2019 |
| A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology A Rambaut, EC Holmes, Á O’Toole, V Hill, JT McCrone, C Ruis, ... Nature microbiology 5 (11), 1403-1407, 2020 | 445 | 2020 |
| Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ... Nature 546 (7658), 406-410, 2017 | 415 | 2017 |
| The genomes of two key bumblebee species with primitive eusocial organization BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ... Genome biology 16 (1), 1-32, 2015 | 258 | 2015 |
| Genomic and epidemiological monitoring of yellow fever virus transmission potential NR Faria, MUG Kraemer, SC Hill, JG de Jesus, RS Aguiar, FCM Iani, ... Science 361 (6405), 894-899, 2018 | 169 | 2018 |
| Evolution and epidemic spread of SARS-CoV-2 in Brazil DS Candido, IM Claro, JG de Jesus, WM Souza, FRR Moreira, S Dellicour, ... Science, 2020 | 167 | 2020 |
| The what, where, how and why of gene ontology—a primer for bioinformaticians L du Plessis, N Škunca, C Dessimoz Briefings in bioinformatics 12 (6), 723-735, 2011 | 162 | 2011 |
| Genomic epidemiology of SARS-CoV-2 in Guangdong province, China J Lu, L du Plessis, Z Liu, V Hill, M Kang, H Lin, J Sun, S François, ... Cell 181 (5), 997-1003. e9, 2020 | 124 | 2020 |
| Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California X Deng, W Gu, S Federman, L Du Plessis, OG Pybus, NR Faria, C Wang, ... Science 369 (6503), 582-587, 2020 | 118* | 2020 |
| A depauperate immune repertoire precedes evolution of sociality in bees SM Barribeau, BM Sadd, L Du Plessis, MJF Brown, SD Buechel, ... Genome biology 16 (1), 83, 2015 | 110 | 2015 |
| Gene expression differences underlying genotype-by-genotype specificity in a host–parasite system SM Barribeau, BM Sadd, L du Plessis, P Schmid-Hempel Proceedings of the National Academy of Sciences 111 (9), 3496-3501, 2014 | 103 | 2014 |
| Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data T Stadler, D Kühnert, DA Rasmussen, L du Plessis PLoS currents 6, 2014 | 80 | 2014 |
| Genomic epidemiology reconstructs the introduction and spread of Zika virus in Central America and Mexico J Thézé, T Li, L du Plessis, J Bouquet, MUG Kraemer, S Somasekar, G Yu, ... Cell host & microbe 23 (6), 855-864. e7, 2018 | 75 | 2018 |
| Clinical, immunological and virological characterization of COVID-19 patients that test re-positive for SARS-CoV-2 by RT-PCR J Lu, J Peng, Q Xiong, Z Liu, H Lin, X Tan, M Kang, R Yuan, L Zeng, ... EBioMedicine 59, 102960, 2020 | 58 | 2020 |
| Taming the BEAST—A community teaching material resource for BEAST 2 J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ... Systematic biology 67 (1), 170-174, 2018 | 39 | 2018 |
| Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science 371 (6530), 708-712, 2021 | 31 | 2021 |
| Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe LAF Frantz, J Haile, AT Lin, A Scheu, C Geörg, N Benecke, M Alexander, ... Proceedings of the National Academy of Sciences 116 (35), 17231-17238, 2019 | 30 | 2019 |
| Getting to the root of epidemic spread with phylodynamic analysis of genomic data L du Plessis, T Stadler Trends in microbiology 23 (7), 383-386, 2015 | 29 | 2015 |
| Impact of the tree prior on estimating clock rates during epidemic outbreaks S Möller, L du Plessis, T Stadler Proceedings of the National Academy of Sciences 115 (16), 4200-4205, 2018 | 22 | 2018 |
