Louis du Plessis
Louis du Plessis
Verified email at zoo.ox.ac.uk - Homepage
Title
Cited by
Cited by
Year
The effect of human mobility and control measures on the COVID-19 epidemic in China
MUG Kraemer, CH Yang, B Gutierrez, CH Wu, B Klein, DM Pigott, ...
Science 368 (6490), 493-497, 2020
11322020
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
6032019
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
A Rambaut, EC Holmes, Á O’Toole, V Hill, JT McCrone, C Ruis, ...
Nature microbiology 5 (11), 1403-1407, 2020
4452020
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ...
Nature 546 (7658), 406-410, 2017
4152017
The genomes of two key bumblebee species with primitive eusocial organization
BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ...
Genome biology 16 (1), 1-32, 2015
2582015
Genomic and epidemiological monitoring of yellow fever virus transmission potential
NR Faria, MUG Kraemer, SC Hill, JG de Jesus, RS Aguiar, FCM Iani, ...
Science 361 (6405), 894-899, 2018
1692018
Evolution and epidemic spread of SARS-CoV-2 in Brazil
DS Candido, IM Claro, JG de Jesus, WM Souza, FRR Moreira, S Dellicour, ...
Science, 2020
1672020
The what, where, how and why of gene ontology—a primer for bioinformaticians
L du Plessis, N Škunca, C Dessimoz
Briefings in bioinformatics 12 (6), 723-735, 2011
1622011
Genomic epidemiology of SARS-CoV-2 in Guangdong province, China
J Lu, L du Plessis, Z Liu, V Hill, M Kang, H Lin, J Sun, S François, ...
Cell 181 (5), 997-1003. e9, 2020
1242020
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California
X Deng, W Gu, S Federman, L Du Plessis, OG Pybus, NR Faria, C Wang, ...
Science 369 (6503), 582-587, 2020
118*2020
A depauperate immune repertoire precedes evolution of sociality in bees
SM Barribeau, BM Sadd, L Du Plessis, MJF Brown, SD Buechel, ...
Genome biology 16 (1), 83, 2015
1102015
Gene expression differences underlying genotype-by-genotype specificity in a host–parasite system
SM Barribeau, BM Sadd, L du Plessis, P Schmid-Hempel
Proceedings of the National Academy of Sciences 111 (9), 3496-3501, 2014
1032014
Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data
T Stadler, D Kühnert, DA Rasmussen, L du Plessis
PLoS currents 6, 2014
802014
Genomic epidemiology reconstructs the introduction and spread of Zika virus in Central America and Mexico
J Thézé, T Li, L du Plessis, J Bouquet, MUG Kraemer, S Somasekar, G Yu, ...
Cell host & microbe 23 (6), 855-864. e7, 2018
752018
Clinical, immunological and virological characterization of COVID-19 patients that test re-positive for SARS-CoV-2 by RT-PCR
J Lu, J Peng, Q Xiong, Z Liu, H Lin, X Tan, M Kang, R Yuan, L Zeng, ...
EBioMedicine 59, 102960, 2020
582020
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
392018
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ...
Science 371 (6530), 708-712, 2021
312021
Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe
LAF Frantz, J Haile, AT Lin, A Scheu, C Geörg, N Benecke, M Alexander, ...
Proceedings of the National Academy of Sciences 116 (35), 17231-17238, 2019
302019
Getting to the root of epidemic spread with phylodynamic analysis of genomic data
L du Plessis, T Stadler
Trends in microbiology 23 (7), 383-386, 2015
292015
Impact of the tree prior on estimating clock rates during epidemic outbreaks
S Möller, L du Plessis, T Stadler
Proceedings of the National Academy of Sciences 115 (16), 4200-4205, 2018
222018
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Articles 1–20