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Felipe Simao
Felipe Simao
Bioinformatics Project Manager at Genevia Technologies
Verified email at geneviatechnologies.com
Title
Cited by
Cited by
Year
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
FA Simão, RM Waterhouse, P Ioannidis, EV Kriventseva, EM Zdobnov
Bioinformatics 31 (19), 3210-3212, 2015
98552015
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
M Manni, MR Berkeley, M Seppey, FA Simão, EM Zdobnov
Molecular biology and evolution 38 (10), 4647-4654, 2021
21942021
BUSCO applications from quality assessments to gene prediction and phylogenomics
RM Waterhouse, M Seppey, FA Simão, M Manni, P Ioannidis, ...
Molecular biology and evolution 35 (3), 543-548, 2018
18392018
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
EV Kriventseva, D Kuznetsov, F Tegenfeldt, M Manni, R Dias, FA Simão, ...
Nucleic acids research 47 (D1), D807-D811, 2019
7512019
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ...
Science 347 (6217), 1258522, 2015
5752015
OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
EM Zdobnov, F Tegenfeldt, D Kuznetsov, RM Waterhouse, FA Simão, ...
Nucleic acids research 45 (D1), D744-D749, 2017
4432017
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
EV Kriventseva, F Tegenfeldt, TJ Petty, RM Waterhouse, FA Simao, ...
Nucleic acids research 43 (D1), D250-D256, 2015
2962015
Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and …
MA Hoy, RM Waterhouse, K Wu, AS Estep, P Ioannidis, WJ Palmer, ...
Genome biology and evolution 8 (6), 1762-1775, 2016
1202016
Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders
P Ioannidis, FA Simao, RM Waterhouse, M Manni, M Seppey, ...
Genome biology and evolution 9 (2), 415-430, 2017
702017
Genome-enabled insights into the biology of thrips as crop pests
D Rotenberg, AA Baumann, S Ben-Mahmoud, O Christiaens, W Dermauw, ...
BMC biology 18, 1-37, 2020
682020
Zdobnov EM. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
FA Simão, RM Waterhouse, P Ioannidis, EV Kriventseva
Bioinformatics 31 (19), 3210-3212, 2015
682015
Using BUSCO to assess insect genomic resources
RM Waterhouse, M Seppey, FA Simão, EM Zdobnov
Insect Genomics: Methods and Protocols, 59-74, 2019
282019
Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera
JP Oeyen, P Baa-Puyoulet, JB Benoit, LW Beukeboom, E Bornberg-Bauer, ...
Genome biology and evolution 12 (7), 1099-1188, 2020
202020
Clinical categorization algorithm (Clical) and machine learning approach (srf-clical) to predict clinical benefit to immunotherapy in metastatic melanoma patients: Real-world …
G Madonna, GV Masucci, M Capone, D Mallardo, AM Grimaldi, ...
Cancers 13 (16), 4164, 2021
72021
The Genome of the Blind Soil-Dwelling and Ancestrally Wingless Dipluran Campodea augens: A Key Reference Hexapod for Studying the Emergence of Insect …
M Manni, FA Simao, HM Robertson, MA Gabaglio, RM Waterhouse, ...
Genome biology and evolution 12 (1), 3534-3549, 2020
52020
SRF-CLICAL: An approach for patient risk stratification using random forest models
FA Simao, R Hieta, JA Pulman, G Madonna, PA Ascierto, R Lewensohn, ...
bioRxiv, 2021.06. 22.448514, 2021
22021
BUSCO v3: Expanded Plant Coverage and Utilities Beyond Benchmarking.
FA Simão, M Seppey, RM Waterhouse, M Manni, P Ioannidis, ...
Plant and Animal Genome XXVI Conference (January 13-17, 2018), 2018
2018
SUPPLEMENTARY ONLINE MATERIAL FOR
Y Xiao, N Suzuki, W He
Acta Palaeontologica Polonica 62 (3), 647-656, 2017
2017
Utilities of OrthoDB and BUSCO
FA Simão
Plant and Animal Genome XXVI Conference (January 13-17, 2018), 0
Sequencing of an Extremophilic Ice Crawler: Galloisiana yuasai
FA Simão, R Machida, B Misof, O Niehuis, EM Zdobnov
Plant and Animal Genome XXVI Conference (January 13-17, 2018), 0
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