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Thomas E. Cheatham, III
Thomas E. Cheatham, III
Professor of Medicinal Chemistry; Director Research Computing; University of Utah
Verified email at utah.edu - Homepage
Title
Cited by
Cited by
Year
AMBER 4.1
DA Case, JW Caldwell, WS Ross, TE Cheatham III, DM Ferguson, ...
Department of Pharmaceutical Chemistry, University of California: San …, 1995
26549*1995
PTRAJ and CPPTRAJ: software for processing and analysis of molecular dynamics trajectory data
DR Roe, TE Cheatham III
Journal of chemical theory and computation 9 (7), 3084-3095, 2013
59002013
Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models
PA Kollman, I Massova, C Reyes, B Kuhn, S Huo, L Chong, M Lee, T Lee, ...
Accounts of chemical research 33 (12), 889-897, 2000
50532000
AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and …
DA Pearlman, DA Case, JW Caldwell, WS Ross, TE Cheatham III, ...
Computer Physics Communications 91 (1-3), 1-41, 1995
37691995
Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations
IS Joung, TE Cheatham III
The journal of physical chemistry B 112 (30), 9020-9041, 2008
33042008
Refinement of the AMBER force field for nucleic acids: improving the description of α/γ conformers
A Pérez, I Marchán, D Svozil, J Sponer, TE Cheatham, CA Laughton, ...
Biophysical journal 92 (11), 3817-3829, 2007
23882007
Continuum solvent studies of the stability of DNA, RNA, and phosphoramidate− DNA helices
J Srinivasan, TE Cheatham, P Cieplak, PA Kollman, DA Case
Journal of the American Chemical Society 120 (37), 9401-9409, 1998
18891998
A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat.
TE Cheatham 3rd, P Cieplak, PA Kollman
Journal of biomolecular structure & dynamics 16 (4), 845, 1999
10991999
Molecular dynamics simulations on solvated biomolecular systems: the particle mesh Ewald method leads to stable trajectories of DNA, RNA, and proteins
TEIII Cheatham, JL Miller, T Fox, TA Darden, PA Kollman
Journal of the American Chemical Society 117 (14), 4193-4194, 1995
9931995
Refinement of the Cornell et al. nucleic acids force field based on reference quantum chemical calculations of glycosidic torsion profiles
M Zgarbová, M Otyepka, J Sponer, A Mladek, P Banas, TE Cheatham III, ...
Journal of chemical theory and computation 7 (9), 2886-2902, 2011
9672011
Clustering molecular dynamics trajectories: 1. Characterizing the performance of different clustering algorithms
J Shao, SW Tanner, N Thompson, TE Cheatham
Journal of chemical theory and computation 3 (6), 2312-2334, 2007
8972007
AMBER 4.1
DA Pearlman, DA Case, JW Caldwell, WS Ross, TE Cheatham III, ...
University of California, San Francisco 45, 1995
7191995
Encyclopedia of computational chemistry
PR Schleyer
(No Title), 1998
5951998
Molecular dynamics simulations of the dynamic and energetic properties of alkali and halide ions using water-model-specific ion parameters
IS Joung, TE Cheatham III
The Journal of Physical Chemistry B 113 (40), 13279-13290, 2009
5792009
AMBER 10; University of California: San Francisco, 2008
DA Case, TA Darden, TE Cheatham III, CL Simmerling, J Wang, RE Duke, ...
Google Scholar There is no corresponding record for this reference, 2008
5082008
Refinement of the sugar–phosphate backbone torsion beta for AMBER force fields improves the description of Z-and B-DNA
M Zgarbová, J Sponer, M Otyepka, TE Cheatham III, R Galindo-Murillo, ...
Journal of chemical theory and computation 11 (12), 5723-5736, 2015
4812015
The flying ice cube: velocity rescaling in molecular dynamics leads to violation of energy equipartition
SC Harvey, RKZ Tan, TE Cheatham III
Journal of computational chemistry 19 (7), 726-740, 1998
4791998
Molecular dynamics simulation of nucleic acids
PA Kollman, TE Cheatham III
Annu. Rev. Phys. Chem 51, 435-471, 2000
450*2000
Molecular dynamics simulation of nucleic acids: successes, limitations, and promise
TE Cheatham III, MA Young
Biopolymers: Original Research on Biomolecules 56 (4), 232-256, 2000
4432000
Assessing the current state of amber force field modifications for DNA
R Galindo-Murillo, JC Robertson, M Zgarbova, J Sponer, M Otyepka, ...
Journal of chemical theory and computation 12 (8), 4114-4127, 2016
4212016
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