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Mihaela Pertea
Mihaela Pertea
Associate Professor, Johns Hopkins University
Verified email at jhu.edu - Homepage
Title
Cited by
Cited by
Year
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
GI Arabidopsis
Nature 408 (6814), 796, 2000
110502000
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
M Pertea, GM Pertea, CM Antonescu, TC Chang, JT Mendell, SL Salzberg
Nature biotechnology 33 (3), 290-295, 2015
83412015
Genome sequence of the human malaria parasite Plasmodium falciparum
MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ...
Nature 419 (6906), 498-511, 2002
53972002
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg
Nature protocols 11 (9), 1650-1667, 2016
46772016
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ...
Genome biology 9, 1-22, 2008
24882008
The ENCODE (ENCyclopedia of DNA elements) project
EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ...
Science 306 (5696), 636-640, 2004
23522004
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ...
Nature 438 (7071), 1151-1156, 2005
16622005
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
WH Majoros, M Pertea, SL Salzberg
Bioinformatics 20 (16), 2878-2879, 2004
14552004
Genome Sequence of Aedes aegypti, a Major Arbovirus Vector
V Nene, JR Wortman, D Lawson, B Haas, C Kodira, Z Tu, B Loftus, Z Xi, ...
Science 316 (5832), 1718-1723, 2007
13292007
The genome of the blood fluke Schistosoma mansoni
M Berriman, BJ Haas, PT LoVerde, RA Wilson, GP Dillon, GC Cerqueira, ...
Nature 460 (7253), 352-358, 2009
12132009
Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis
JM Carlton, RP Hirt, JC Silva, AL Delcher, M Schatz, Q Zhao, JR Wortman, ...
Science 315 (5809), 207-212, 2007
9982007
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea
Genome biology 20, 1-13, 2019
9892019
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
JM Carlton, SV Angiuoli, BB Suh, TW Kooij, M Pertea, JC Silva, ...
Nature 419 (6906), 512-519, 2002
9032002
GFF utilities: GffRead and GffCompare
G Pertea, M Pertea
F1000Research 9, 2020
8642020
The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans
BJ Loftus, E Fung, P Roncaglia, D Rowley, P Amedeo, D Bruno, ...
Science 307 (5713), 1321-1324, 2005
8502005
GeneSplicer: a new computational method for splice site prediction
M Pertea, X Lin, SL Salzberg
Nucleic acids research 29 (5), 1185-1190, 2001
7352001
Draft genome of the filarial nematode parasite Brugia malayi
E Ghedin, S Wang, D Spiro, E Caler, Q Zhao, J Crabtree, JE Allen, ...
Science 317 (5845), 1756-1760, 2007
7172007
Chromosome 2 Sequence of the Human Malaria Parasite Plasmodium falciparum
MJ Gardner, H Tettelin, DJ Carucci, LM Cummings, L Aravind, EV Koonin, ...
Science 282 (5391), 1126-1132, 1998
5821998
Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations
K Deng, M Pertea, A Rongvaux, L Wang, CM Durand, G Ghiaur, J Lai, ...
Nature 517 (7534), 381-385, 2015
5702015
Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes
MJ Gardner, R Bishop, T Shah, EP De Villiers, JM Carlton, N Hall, Q Ren, ...
Science 309 (5731), 134-137, 2005
3892005
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