Kieran O'Neill

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Coauteurs

Ryan BrinkmanBritish Columbia Cancer AgencyAdresse e-mail validée de bccrc.ca
Nima AghaeepourStanford UniversityAdresse e-mail validée de stanford.edu
Holger HoosRWTH Aachen University, Germany • Leiden University, Netherlands • University of British ColumbiaAdresse e-mail validée de cs.rwth-aachen.de
Aly KarsanBC Cancer AgencyAdresse e-mail validée de bcgsc.ca
Greg FinakCTO, Ozette TechnologiesAdresse e-mail validée de ozette.ai
Richard H. ScheuermannJ. Craig Venter InstituteAdresse e-mail validée de jcvi.org
Peter LansdorpBC Cancer AgencyAdresse e-mail validée de bccrc.ca
Pratip K ChattopadhyayPrecision Immunology Laboratory, NYU Langone HealthAdresse e-mail validée de nyumc.org
Mario RoedererVaccine Research Center, NIAID, NIHAdresse e-mail validée de nih.gov
Oscar CorchoOntology Engineering Group, Departamento de Inteligencia Artificial, UPMAdresse e-mail validée de fi.upm.es
Phillip LordLecturer in Computing Science, Newcastle UniversityAdresse e-mail validée de newcastle.ac.uk
Robert StevensProfessor of Computer Science, Department of Computer Science, university of manchesterAdresse e-mail validée de manchester.ac.uk
Habil ZareAssistant Professor at University of Texas Health Science Center in San AntonioAdresse e-mail validée de uthscsa.edu
Henning HermjakobHead of Molecular Systems, European Bioinformatics Institute (EMBL-EBI)Adresse e-mail validée de ebi.ac.uk
Rafael C. JimenezELIXIRAdresse e-mail validée de ebi.ac.uk
Alberto LabargaSenior Data Scientist, Navarrabiomed, Universidad Pública de NavarraAdresse e-mail validée de unavarra.es
Antony QuinnAdresse e-mail validée de antonyquinn.co.uk
Alexander Garcia Castrocreated on: 11 dec-2014 h-index not accurateAdresse e-mail validée de fsu.edu
Adrin Jalaliscikit-learn core developer, Berlin, Germany
IClinical Professor, Department of Pathology, UBCAdresse e-mail validée de mail.ubc.ca

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Kieran O'Neill

BC Cancer Agency

Adresse e-mail validée de bccrc.ca


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ... Nature methods 10 (3), 228-238, 2013	644	2013
Flow Cytometry Bioinformatics K O'Neill, N Aghaeepour, J Špidlen, R Brinkman PLOS Computational Biology 9 (12), e1003365, 2013	134	2013
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays N Aghaeepour, PK Chattopadhyay, A Ganesan, K O'Neill, H Zare, A Jalali, ... Bioinformatics 28 (7), 1009-1016, 2012	96	2012
High-Resolution Single-Cell DNA Methylation Measurements Reveal Epigenetically Distinct Hematopoietic Stem Cell Subpopulations T Hui, Q Cao, J Wegrzyn-Woltosz, K O'Neill, CA Hammond, DJHF Knapp, ... Stem cell reports 11 (2), 578-592, 2018	88	2018
High-resolution single-cell DNA methylation measurements reveal epigenetically distinct hematopoietic stem cell subpopulations T Hui, Q Cao, J Wegrzyn-Woltosz, K O'Neill, CA Hammond, DJHF Knapp, ... Stem cell reports 11 (2), 578-592, 2018	88	2018
RchyOptimyx: Cellular hierarchy optimization for flow cytometry N Aghaeepour, A Jalali, K O'Neill, PK Chattopadhyay, M Roederer, ... Cytometry Part A 81 (12), 1022-1030, 2012	70	2012
Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase V Akbari, JM Garant, K O’Neill, P Pandoh, R Moore, MA Marra, M Hirst, ... Genome biology 22 (1), 1-21, 2021	47	2021
Developing ontologies within decentralised settings A Garcia, K O’Neill, LJ Garcia, P Lord, R Stevens, O Corcho, F Gibson Semantic e-Science, 99-139, 2010	45	2010
Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data K O’Neill, A Jalali, N Aghaeepour, H Hoos, RR Brinkman Bioinformatics 30 (9), 1329-1330, 2014	43	2014
Altered microRNA expression links IL6 and TNF-induced inflammaging with myeloid malignancy in humans and mice JM Grants, J Wegrzyn, T Hui, K O’Neill, M Shadbolt, DJHF Knapp, ... Blood, The Journal of the American Society of Hematology 135 (25), 2235-2251, 2020	42	2020
BAIT: Organizing genomes and mapping rearrangements in single cells M Hills, K O’Neill, E Falconer, R Brinkman, PM Lansdorp Genome medicine 5 (9), 1-17, 2013	41	2013
Improved structural variant interpretation for hereditary cancer susceptibility using long-read sequencing ML Thibodeau, K O’Neill, K Dixon, C Reisle, KL Mungall, M Krzywinski, ... Genetics in Medicine 22 (11), 1892-1897, 2020	39	2020
The miR-185/PAK6 axis predicts therapy response and regulates survival of drug-resistant leukemic stem cells in CML H Lin, K Rothe, M Chen, A Wu, A Babaian, R Yen, J Zeng, J Ruschmann, ... Blood, The Journal of the American Society of Hematology 136 (5), 596-609, 2020	38	2020
Dasty2, an Ajax protein DAS client RC Jimenez, AF Quinn, A Garcia, A Labarga, K O'Neill, F Martinez, ... Bioinformatics 24 (18), 2119-2121, 2008	35	2008
Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing V Akbari, JM Garant, K O'Neill, P Pandoh, R Moore, MA Marra, M Hirst, ... Elife 11, e77898, 2022	30	2022
MiR-139-5p is a potent tumor suppressor in adult acute myeloid leukemia K Krowiorz, J Ruschmann, C Lai, M Ngom, T Maetzig, V Martins, ... Blood Cancer Journal 6 (12), e508, 2016	28	2016
Deep profiling of multitube flow cytometry data K O'Neill, N Aghaeepour, J Parker, D Hogge, A Karsan, B Dalal, ... Bioinformatics, btv008, 2015	15	2015
Construction of whole genomes from scaffolds using single cell strand-seq data M Hills, E Falconer, K O’Neill, AD Sanders, K Howe, V Guryev, ... International journal of molecular sciences 22 (7), 3617, 2021	14	2021
Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq V Akbari, VCT Hanlon, K O'Neill, L Lefebvre, KA Schrader, PM Lansdorp, ... bioRxiv, 2022	12	2022
Assembling Draft Genomes using contiBAIT. K O'Neill, M Hills, M Gottlieb, M Borkowski, A Karsan, PM Lansdorp Bioinformatics (Oxford, England), 2017	10	2017

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