Nicolas Alcala

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Severine VuilleumierEPFLVerified email at epfl.ch
Lynnette Fernandez-CuestaRare Cancers Genomics Team leader, IARC-WHOVerified email at iarc.fr
Matthieu FollInternational Agency for Research on Cancer (IARC/WHO)Verified email at iarc.who.int
Noah RosenbergStanford UniversityVerified email at stanford.edu
Lise MangiantePhD Student at International Agency for Research on Cancer / World Health OrganizationVerified email at students.iarc.fr
Jerome GoudetProfessor of population genetics, University of LausanneVerified email at unil.ch
Catherine VoegeleInternational Agency for Research on Cancer (IARC/WHO)Verified email at iarc.who.int
Alexandra Sexton-OatesInternational Agency for Research on CancerVerified email at iarc.who.int
Christe PhilippeDepartment of Ecology & Evolution, University of LausanneVerified email at unil.ch
Tania JenkinsUniversity of GenevaVerified email at unige.ch
H R SiegismundDepartment of Biology, University of CopenhagenVerified email at BIO.KU.DK
John B. A. OkelloMIT - Massachusetts Institute of TechnologyVerified email at alum.mit.edu
Pierre JolyUMR 5023 LEHNA Univ LYON 1Verified email at univ-lyon1.fr
Jeffrey D. JensenProfessor, Arizona State University (ASU)Verified email at asu.edu
Amalio TelentiThe Scripps Research InstituteVerified email at scripps.edu
Christophe DufresnesMuséum National d'Histoire Naturelle (MNHN)Verified email at mnhn.fr
Luca FumagalliResearcher and Lecturer, University of LausanneVerified email at unil.ch
Vincent MuwanikaProfessor of Conservation Biology, Makerere UniversityVerified email at mak.ac.ug
Behnoush Abedi-ArdekaniInternational Agency for Research on CancerVerified email at iarc.fr
Emilie MathianInternational Agency of Research on Cancer (IARC)Verified email at iarc.who.int

Nicolas Alcala

International Agency for Research on Cancer-World Health Organization

Verified email at iarc.who.int

Computational biology Cancer genomics Evolutionary biology population genetics


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EURACAN/IASLC proposals for updating the histologic classification of pleural mesothelioma: towards a more multidisciplinary approach AG Nicholson, JL Sauter, AK Nowak, HL Kindler, RR Gill, M Remy-Jardin, ... Journal of Thoracic Oncology 15 (1), 29-49, 2020	146	2020
Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids N Alcala, N Leblay, AAG Gabriel, L Mangiante, D Hervás, T Giffon, ... Nature communications 10 (1), 3407, 2019	143	2019
On the transition of genetic differentiation from isolation to panmixia: What we can learn from GST and D N Alcala, J Goudet, S Vuilleumier Theoretical population biology 93, 75-84, 2014	98	2014
Redefining malignant pleural mesothelioma types as a continuum uncovers immune-vascular interactions N Alcala, L Mangiante, N Le-Stang, CE Gustafson, S Boyault, F Damiola, ... EBioMedicine 48, 191-202, 2019	60	2019
Host shift and cospeciation rate estimation from co‐phylogenies N Alcala, T Jenkins, P Christe, S Vuilleumier Ecology letters 20 (8), 1014-1024, 2017	43	2017
Peak and persistent excess of genetic diversity following an abrupt migration increase N Alcala, D Streit, J Goudet, S Vuilleumier Genetics 193 (3), 953-971, 2013	42	2013
Turnover and accumulation of genetic diversity across large time-scale cycles of isolation and connection of populations N Alcala, S Vuilleumier Proceedings of the Royal Society B: Biological Sciences 281 (1794), 20141369, 2014	36	2014
Mathematical constraints on FST: biallelic markers in arbitrarily many populations N Alcala, NA Rosenberg Genetics 206 (3), 1581-1600, 2017	29	2017
, Jost's D, and F_ST are similarly constrained by allele frequencies: A mathematical, simulation, and empirical study N Alcala, NA Rosenberg Molecular ecology 28 (7), 1624-1636, 2019	24	2019
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity L Mangiante, N Alcala, A Sexton-Oates, A Di Genova, A Gonzalez-Perez, ... Nature Genetics 55 (4), 607-618, 2023	23*	2023
The genomic signature of population reconnection following isolation: from theory to HIV N Alcala, JD Jensen, A Telenti, S Vuilleumier G3: Genes, Genomes, Genetics 6 (1), 107-120, 2016	20	2016
Genetic consequences of population expansions and contractions in the common hippopotamus (Hippopotamus amphibius) since the Late Pleistocene C Stoffel, C Dufresnes, JBA Okello, C Noirard, P Joly, S Nyakaana, ... Molecular ecology 24 (10), 2507-2520, 2015	20	2015
Transitions from reproductive systems governed by two self-incompatible loci to one in fungi S Vuilleumier, N Alcala, H Niculita-Hirzel Evolution 67 (2), 501-516, 2013	16	2013
A molecular map of lung neuroendocrine neoplasms AAG Gabriel, E Mathian, L Mangiante, C Voegele, V Cahais, A Ghantous, ... GigaScience 9 (11), giaa112, 2020	15	2020
Challenges in lung and thoracic pathology: molecular advances in the classification of pleural mesotheliomas L Fernandez-Cuesta, L Mangiante, N Alcala, M Foll Virchows Archiv 478, 73-80, 2021	11	2021
Network analysis for species management in rivers networks: Application to the Loire River A Chaput-Bardy, N Alcala, J Secondi, S Vuilleumier Biological Conservation 210, 26-36, 2017	11	2017
The blood proteome of imminent lung cancer diagnosis Nature communications 14 (1), 3042, 2023	9*	2023
Mathematical constraints on F_ST: multiallelic markers in arbitrarily many populations N Alcala, NA Rosenberg Philosophical Transactions of the Royal Society B 377 (1852), 20200414, 2022	9	2022
Druggable growth dependencies and tumor evolution analysis in patient-derived organoids of neuroendocrine neoplasms from multiple body sites TL Dayton, N Alcala, L Moonen, L den Hartigh, V Geurts, L Mangiante, ... Cancer cell 41 (12), 2083-2099. e9, 2023	7*	2023
Needlestack: An ultra-sensitive variant caller for multi-sample next generation sequencing data TM Delhomme, PH Avogbe, AAG Gabriel, N Alcala, N Leblay, C Voegele, ... NAR Genomics and Bioinformatics 2 (2), lqaa021, 2020	7	2020

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