| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1665* | 2020 |
| Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020 | 551* | 2020 |
| Reliability assessment of null allele detection: inconsistencies between and within different methods MJ Dąbrowski, M Pilot, M Kruczyk, M Żmihorski, HM Umer, J Gliwicz Molecular Ecology Resources 14 (2), 361-373, 2014 | 64 | 2014 |
| Proteogenomics of non-small cell lung cancer reveals molecular subtypes associated with specific therapeutic targets and immune-evasion mechanisms J Lehtiö, T Arslan, I Siavelis, Y Pan, F Socciarelli, O Berkovska, HM Umer, ... Nature cancer 2 (11), 1224-1242, 2021 | 47* | 2021 |
| A significant regulatory mutation burden at a high‐affinity position of the CTCF motif in gastrointestinal cancers HM Umer, M Cavalli, MJ Dabrowski, K Diamanti, M Kruczyk, G Pan, ... Human mutation 37 (9), 904-913, 2016 | 43 | 2016 |
| Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases M Cavalli, N Baltzer, HM Umer, J Grau, I Lemnian, G Pan, O Wallerman, ... Scientific reports 9 (1), 2695, 2019 | 27 | 2019 |
| Proteogenomics refines the molecular classification of chronic lymphocytic leukemia SA Herbst, M Vesterlund, AJ Helmboldt, R Jafari, I Siavelis, M Stahl, ... Nature Communications 13 (1), 6226, 2022 | 21 | 2022 |
| Peak Finder Metaserver-a novel application for finding peaks in ChIP-seq data M Kruczyk, HM Umer, S Enroth, J Komorowski BMC bioinformatics 14, 1-7, 2013 | 21 | 2013 |
| Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides HM Umer, E Audain, Y Zhu, J Pfeuffer, T Sachsenberg, J Lehtiö, ... Bioinformatics 38 (5), 1470-1472, 2022 | 19 | 2022 |
| Therapeutic cancer vaccination with immunopeptidomics-discovered antigens confers protective antitumor efficacy K Peltonen, S Feola, HM Umer, J Chiaro, G Mermelekas, E Ylösmäki, ... Cancers 13 (14), 3408, 2021 | 18 | 2021 |
| Maps of context-dependent putative regulatory regions and genomic signal interactions K Diamanti, HM Umer, M Kruczyk, MJ Dąbrowski, M Cavalli, C Wadelius, ... Nucleic Acids Research 44 (19), 9110-9120, 2016 | 11 | 2016 |
| Proteogenomic analysis of acute myeloid leukemia associates relapsed disease with reprogrammed energy metabolism both in adults and children S Stratmann, M Vesterlund, HM Umer, S Eshtad, A Skaftason, MK Herlin, ... Leukemia 37 (3), 550-559, 2023 | 7 | 2023 |
| Beyond the exome: utility of long-read whole genome sequencing in exome-negative autosomal recessive diseases L AlAbdi, HE Shamseldin, E Khouj, R Helaby, B Aljamal, M Alqahtani, ... Genome Medicine 15 (1), 114, 2023 | 6 | 2023 |
| funMotifs: Tissue-specific transcription factor motifs HM Umer, K Smolinska-Garbulowska, N Marzouka, Z Khaliq, C Wadelius, ... BioRxiv, 683722, 2019 | 6 | 2019 |
| Glioblastoma stem cells express non‐canonical proteins and exclusive mesenchymal‐like or non‐mesenchymal‐like protein signatures H Babačić, S Galardi, HM Umer, M Hellström, L Uhrbom, N Maturi, ... Molecular Oncology 17 (2), 238-260, 2023 | 4 | 2023 |
| Functional annotation of noncoding mutations in cancer HM Umer, K Smolinska, J Komorowski, C Wadelius Life science alliance 4 (9), 2021 | 4 | 2021 |
| A Peak-Finder Meta Server for ChIP-Seq Analysis H Umer | 1 | 2011 |
| Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... NATURE 614 (7948), E40-E40, 2023 | | 2023 |
| Proteogenomic Subtyping of Chronic Lymphocytic Leukemia Identifies a Novel Poor Outcome Subgroup with a Distinct Drug Response Profile SA Herbst, M Vesterlund, R Jafari, I Siavelis, M Stahl, E Schitter, ... Blood 136, 10-11, 2020 | | 2020 |
| SUPPLEMENTAL INFORMATION FOR: Proteogenomic analysis of relapsed acute myeloid leukemia in adults and children S Stratmann, M Vesterlund, HM Umer, A Skaftason, MK Herlin, ... | | 2020 |
